RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 UAP1L1Q3KQV9 507 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 PRRT3Q5FWE3 981 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 CRTC3Q6UUV7 619 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 ZBED8Q8IZ13 594 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.51■■□□□ 1.03
SNX1-210ENST00000560260 LMX1AQ8TE12 382 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 IFT81Q8WYA0 676 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 OR2M4Q96R27 311 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 COPS8Q99627 209 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 SLC13A1Q9BZW2 595 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 PHACTR1Q9C0D0 580 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 ZC3H7BQ9UGR2 993 aaKnown RBP21.51■■□□□ 1.03
SNX1-210ENST00000560260 FAM169AQ9Y6X4 670 aa21.51■■□□□ 1.03
SNX1-210ENST00000560260 ASCC3Q8N3C0 2202 aaKnown RBP21.51■■□□□ 1.03
SNX1-210ENST00000560260 EIF3HO15372 352 aaKnown RBP eCLIP21.5■■□□□ 1.03
SNX1-210ENST00000560260 CD3EAPO15446 510 aaKnown RBP21.5■■□□□ 1.03
SNX1-210ENST00000560260 AQP9O43315 295 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 CDK14O94921 469 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 SLU7O95391 586 aaKnown RBP21.5■■□□□ 1.03
SNX1-210ENST00000560260 POLBP06746 335 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 MSH3P20585 1137 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 BLKP51451 505 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 LIMK1P53667 647 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 FASTKD1Q53R41 847 aaKnown RBP21.5■■□□□ 1.03
SNX1-210ENST00000560260 SPANXN3Q5MJ09 141 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 TRMT10BQ6PF06 316 aaKnown RBP21.5■■□□□ 1.03
SNX1-210ENST00000560260 DET1Q7L5Y6 550 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 NRROSQ86YC3 692 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 GALNT13Q8IUC8 556 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 NAT9Q9BTE0 207 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 RMI1Q9H9A7 625 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 GPSM3Q9Y4H4 160 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 PCDHGB2Q9Y5G2 931 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 PRSS21Q9Y6M0 314 aa21.5■■□□□ 1.03
SNX1-210ENST00000560260 PIEZO1Q92508 2521 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 PTPRZ1P23471 2315 aaPredicted RBP21.49■■□□□ 1.03
SNX1-210ENST00000560260 GRID2O43424 1007 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 OR1I1O60431 355 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 PAMP19021 973 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 ITIH4Q14624 930 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 LONRF1Q17RB8 773 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 PLA2G4EQ3MJ16 856 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 DBX2Q6ZNG2 339 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 C11orf96Q7Z7L8 435 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 CCDC25Q86WR0 208 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 ZCCHC2Q9C0B9 1178 aaKnown RBP21.49■■□□□ 1.03
SNX1-210ENST00000560260 C20orf96Q9NUD7 363 aaPredicted RBP21.49■■□□□ 1.03
SNX1-210ENST00000560260 SPASTQ9UBP0 616 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 SLC23A2Q9UGH3 650 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 ZNHIT2Q9UHR6 403 aa21.49■■□□□ 1.03
SNX1-210ENST00000560260 OR2AG2A6NM03 316 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 GPR89AB7ZAQ6 455 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 TTC4O95801 387 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 GPR89BP0CG08 455 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 AK4P27144 223 aaPredicted RBP21.48■■□□□ 1.03
SNX1-210ENST00000560260 CTBSQ01459 385 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 HLTFQ14527 1009 aaKnown RBP eCLIP21.48■■□□□ 1.03
SNX1-210ENST00000560260 TYSND1Q2T9J0 566 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 UBAP2Q5T6F2 1119 aaKnown RBP21.48■■□□□ 1.03
SNX1-210ENST00000560260 NEPROQ6NW34 567 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 TMEM220Q6QAJ8 160 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 TRAPPC5Q8IUR0 188 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 CCNJLQ8IV13 435 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 CLDN19Q8N6F1 224 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 BEND7Q8N7W2 519 aaPredicted RBP21.48■■□□□ 1.03
SNX1-210ENST00000560260 GPR150Q8NGU9 434 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 GPBAR1Q8TDU6 330 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.48■■□□□ 1.03
SNX1-210ENST00000560260 SGF29Q96ES7 293 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 C9orf72Q96LT7 481 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 ANKZF1Q9H8Y5 726 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 TRNAU1APQ9NX07 287 aaKnown RBP21.48■■□□□ 1.03
SNX1-210ENST00000560260 SLC17A6Q9P2U8 582 aa21.48■■□□□ 1.03
SNX1-210ENST00000560260 FFAR2O15552 330 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 ERVK-10P10266 1014 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 ACP5P13686 325 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 CTSEP14091 401 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 GTF2H3Q13889 308 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 DEFB133Q30KQ1 61 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 BCL7AQ4VC05 210 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 ZNF789Q5FWF6 425 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 XKR5Q6UX68 686 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 PACS1Q6VY07 963 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 CAPN12Q6ZSI9 719 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 CHST15Q7LFX5 561 aaPredicted RBP21.47■■□□□ 1.03
SNX1-210ENST00000560260 LRRTM4Q86VH4 590 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 KCNMB4Q86W47 210 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 DENND6AQ8IWF6 608 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 GSPT2Q8IYD1 628 aaKnown RBP21.47■■□□□ 1.03
SNX1-210ENST00000560260 OTUD6BQ8N6M0 293 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 NETO1Q8TDF5 533 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 CERS2Q96G23 380 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 DCUN1D1Q96GG9 259 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 FAM129AQ9BZQ8 928 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 FOXP3Q9BZS1 431 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 RRAGDQ9NQL2 400 aaPredicted RBP21.47■■□□□ 1.03
SNX1-210ENST00000560260 NFU1Q9UMS0 254 aa21.47■■□□□ 1.03
SNX1-210ENST00000560260 ARID1BQ8NFD5 2236 aaPredicted RBP21.46■■□□□ 1.03
SNX1-210ENST00000560260 PRR19A6NJB7 356 aa21.46■■□□□ 1.03
SNX1-210ENST00000560260 TRIM38O00635 465 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms