RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PFKFB4Q16877 469 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 SETMARQ53H47 684 aaPredicted RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 PRPF38BQ5VTL8 546 aaKnown RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 NXPE1Q8N323 547 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 MAPK15Q8TD08 544 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 CYB5D2Q8WUJ1 264 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 ELSPBP1Q96BH3 223 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 MOCOSQ96EN8 888 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 PDLIM5Q96HC4 596 aaKnown RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 KLHL32Q96NJ5 620 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 C1orf21Q9H246 121 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 GSTO2Q9H4Y5 243 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 SARS2Q9NP81 518 aaKnown RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 ACSS2Q9NR19 701 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 RAD18Q9NS91 495 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 PKD2L2Q9NZM6 624 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 GRXCR2A6NFK2 248 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 STX16-NPEPL1H3BU86 382 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 UBXN8O00124 270 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 NEMP1O14524 444 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 STX16O14662 325 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 TULP3O75386 442 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 ATP6V1G2O95670 118 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 CHRM1P11229 460 aaPredicted RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 FOSL2P15408 326 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 KCNC1P48547 511 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 COPAP53621 1224 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 TSNQ15631 228 aaKnown RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 CHRNA6Q15825 494 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 CRY1Q16526 586 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 TMEM215Q68D42 235 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 TSPAN33Q86UF1 283 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 CPA6Q8N4T0 437 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 HCAR2Q8TDS4 363 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 FRS2Q8WU20 508 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 UBE2ZQ9H832 354 aaPredicted RBP16.67■□□□□ 0.26
LDLR-206ENST00000557958 TAS2R1Q9NYW7 299 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 BAIAP2L1Q9UHR4 511 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 PLA2G4CQ9UP65 541 aa16.67■□□□□ 0.26
LDLR-206ENST00000557958 NPEPPSL1A6NEC2 478 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 DCXO43602 365 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 SNX2O60749 519 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 XPAP23025 273 aaPredicted RBP16.66■□□□□ 0.26
LDLR-206ENST00000557958 EPHA3P29320 983 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 NSG1P42857 185 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 CLCN7P51798 805 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 FCHO2Q0JRZ9 810 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 COL19A1Q14993 1142 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 LSM12Q3MHD2 195 aaKnown RBP16.66■□□□□ 0.26
LDLR-206ENST00000557958 NXNQ6DKJ4 435 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 RINLQ6ZS11 566 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 ADAMTSL2Q86TH1 951 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 CHST14Q8NCH0 376 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 CEP70Q8NHQ1 597 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 EEF1AKMT1Q8WVE0 214 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 UTP4Q969X6 686 aaKnown RBP16.66■□□□□ 0.26
LDLR-206ENST00000557958 FUBP1Q96AE4 644 aaKnown RBP16.66■□□□□ 0.26
LDLR-206ENST00000557958 MRGPRX3Q96LB0 322 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 OR52B2Q96RD2 323 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 DEC1Q9P2X7 70 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 IL36AQ9UHA7 158 aa16.66■□□□□ 0.26
LDLR-206ENST00000557958 MTF2Q9Y483 593 aaPredicted RBP16.66■□□□□ 0.26
LDLR-206ENST00000557958 AGAP14A8MT82 685 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 A8MX80 341 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 GSC2O15499 205 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 ECI2O75521 394 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 WFS1O76024 890 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 TSPAN12O95859 305 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 MTHFD2P13995 350 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 TTLL9Q3SXZ7 439 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 UNC50Q53HI1 259 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 NAIF1Q69YI7 327 aaPredicted RBP16.65■□□□□ 0.26
LDLR-206ENST00000557958 MACC1Q6ZN28 852 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 MTSS1LQ765P7 747 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 GPSM1Q86YR5 675 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 CPNE9Q8IYJ1 553 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 DEFB123Q8N688 67 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 GPR26Q8NDV2 337 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 SUSD6Q92537 303 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 VOPP1Q96AW1 172 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 PANX3Q96QZ0 392 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 MIPEPQ99797 713 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 CADM1Q9BY67 442 aaKnown RBP16.65■□□□□ 0.26
LDLR-206ENST00000557958 WDR55Q9H6Y2 383 aaPredicted RBP16.65■□□□□ 0.26
LDLR-206ENST00000557958 B4GALT6Q9UBX8 382 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 TSPAN11A1L157 253 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 TTC34A8MYJ7 566 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 GPR39O43194 453 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 LEFTY1O75610 366 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 S100BP04271 92 aaPredicted RBP16.65■□□□□ 0.26
LDLR-206ENST00000557958 CISD3P0C7P0 127 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 DGKAP23743 735 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 VIPR1P32241 457 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 PTSQ03393 145 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 MESP2Q0VG99 397 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 BPTFQ12830 3046 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 EIF4HQ15056 248 aaKnown RBP16.65■□□□□ 0.26
LDLR-206ENST00000557958 ANKS6Q68DC2 871 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 FRA10AC1Q70Z53 315 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 MYO1HQ8N1T3 1032 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms