RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 NUDCD1Q96RS6 583 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 MGME1Q9BQP7 344 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 FRMD8Q9BZ67 464 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 CDH19Q9H159 772 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 ZWILCHQ9H900 591 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 CARS2Q9HA77 564 aaKnown RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 APMAPQ9HDC9 416 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 CASS4Q9NQ75 786 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 AIPL1Q9NZN9 384 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 CWC15Q9P013 229 aaKnown RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 B4GALT6Q9UBX8 382 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 PILRAQ9UKJ1 303 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 SLC17A4Q9Y2C5 497 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 POLR3KQ9Y2Y1 108 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-220ENST00000556486 PCDHGA3Q9Y5H0 932 aa9.95□□□□□ -0.82
SCFD1-220ENST00000556486 DOPEY1Q5JWR5 2465 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 ZW10O43264 779 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 DAPK3O43293 454 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 MAFKO60675 156 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 DNAJB5O75953 348 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 FUCA1P04066 466 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 FGF1P05230 155 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 CEACAM5P06731 702 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 IVLP07476 585 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 FURINP09958 794 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 MYBL1P10243 752 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 TCN2P20062 427 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 TNFAIP3P21580 790 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 F8A1P23610 371 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 VIPR1P32241 457 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 SCNN1BP51168 640 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 PEX6Q13608 980 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 ERV3-1Q14264 604 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 PCSK7Q16549 785 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 BOLA3Q53S33 107 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 PPP6R3Q5H9R7 873 aaPredicted RBP9.94□□□□□ -0.82
SCFD1-220ENST00000556486 DCAF12Q5T6F0 453 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 CCDC181Q5TID7 509 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 SASS6Q6UVJ0 657 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 ARHGAP36Q6ZRI8 547 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 SPATC1Q76KD6 591 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 VN1R5Q7Z5H4 357 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 HEATR4Q86WZ0 1026 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 NRROSQ86YC3 692 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 LRRC49Q8IUZ0 686 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 RAVER1Q8IY67 606 aaKnown RBP9.94□□□□□ -0.82
SCFD1-220ENST00000556486 NLGN4XQ8N0W4 816 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 CCDC112Q8NEF3 446 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 NLGN4YQ8NFZ3 816 aaPredicted RBP9.94□□□□□ -0.82
SCFD1-220ENST00000556486 RTP4Q96DX8 246 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 NUS1Q96E22 293 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 SCRN2Q96FV2 425 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 DDA1Q9BW61 102 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 GSDMCQ9BYG8 508 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 TRIM7Q9C029 511 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 PHPT1Q9NRX4 125 aaPredicted RBP9.94□□□□□ -0.82
SCFD1-220ENST00000556486 LUZP4Q9P127 313 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 KLHL3Q9UH77 587 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 PCSK1NQ9UHG2 260 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 PFDN2Q9UHV9 154 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 PHTF1Q9UMS5 762 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 SOX13Q9UN79 622 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 PLEKHM1Q9Y4G2 1056 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 ST14Q9Y5Y6 855 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 SCINQ9Y6U3 715 aa9.94□□□□□ -0.82
SCFD1-220ENST00000556486 MED13Q9UHV7 2174 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 IGHV1OR21-1A0A087WYE8 117 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 LRRC53A6NM62 1247 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 B2RBV5 119 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 DFFAO00273 331 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 PPM1DO15297 605 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 CLDN1O95832 211 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 FTLP02792 175 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 THRAP10827 490 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 LHCGRP22888 699 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 GNPDA1P46926 289 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 POLD2P49005 469 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 CDH6P55285 790 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 CDK3Q00526 305 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 ILF3Q12906 894 aaKnown RBP eCLIP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 TRA2AQ13595 282 aaKnown RBP eCLIP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 ACOX1Q15067 660 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 EIF2S3LQ2VIR3 472 aaKnown RBP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 PRR30Q53SZ7 412 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 C6orf15Q6UXA7 325 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 ZNF571Q7Z3V5 609 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-220ENST00000556486 POLNQ7Z5Q5 900 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 TECPR1Q7Z6L1 1165 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 TP53INP2Q8IXH6 220 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 PGBD5Q8N414 524 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 TEX26Q8N6G2 289 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 NIPA2Q8N8Q9 360 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 CPT1CQ8TCG5 803 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 TEKT4Q8WW24 435 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 FATE1Q969F0 183 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 TRIM11Q96F44 468 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 DPYSL5Q9BPU6 564 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 BPIFA3Q9BQP9 254 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 ASPSCR1Q9BZE9 553 aa9.93□□□□□ -0.82
SCFD1-220ENST00000556486 ISCUQ9H1K1 167 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms