RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 NEPROQ6NW34 567 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 CHST15Q7LFX5 561 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TAF8Q7Z7C8 310 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 GATAD2AQ86YP4 633 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 PALM2Q8IXS6 379 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 LMNTD2Q8IXW0 634 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 RBFAQ8N0V3 343 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 SLC25A45Q8N413 288 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 OTUD6BQ8N6M0 293 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.6□□□□□ -0.23
PTCH1-213ENST00000546820 ZNF548Q8NEK5 533 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-213ENST00000546820 FBXO25Q8TCJ0 367 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 GPBAR1Q8TDU6 330 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 RHBDD1Q8TEB9 315 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 PYROXD1Q8WU10 500 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 GLMNQ92990 594 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TCF12Q99081 682 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 LRRC61Q9BV99 259 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 PHACTR1Q9C0D0 580 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TMEM168Q9H0V1 697 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TCEAL2Q9H3H9 227 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-213ENST00000546820 NLGN3Q9NZ94 848 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 DMGDHQ9UI17 866 aaKnown RBP13.6□□□□□ -0.23
PTCH1-213ENST00000546820 PNMA8BQ9ULN7 279 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TEX264Q9Y6I9 313 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TDRD6O60522 2096 aaKnown RBP13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TMEM131Q92545 1883 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 E7ESA3 106 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 LMO7DNF2Z398 122 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 QSOX1O00391 747 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 SLC30A4O14863 429 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 YY2O15391 372 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 GPR39O43194 453 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 NDUFS3O75489 264 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 AP2A2O94973 939 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 ZNF7P17097 686 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-213ENST00000546820 NSG1P42857 185 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 CDKN1CP49918 316 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-213ENST00000546820 CUL1Q13616 776 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 HLTFQ14527 1009 aaKnown RBP eCLIP13.59□□□□□ -0.23
PTCH1-213ENST00000546820 TRADDQ15628 312 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 HP1BP3Q5SSJ5 553 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-213ENST00000546820 PSAPL1Q6NUJ1 521 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 TMEM220Q6QAJ8 160 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 TRAPPC5Q8IUR0 188 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 PIANPQ8IYJ0 282 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 ZBED8Q8IZ13 594 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 EID2Q8N6I1 236 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 RASGEF1AQ8N9B8 481 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 GPR150Q8NGU9 434 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 PWWP2AQ96N64 755 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 FCRL3Q96P31 734 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-213ENST00000546820 CDC6Q99741 560 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 VPS37BQ9H9H4 285 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 SAYSD1Q9NPB0 183 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 C20orf96Q9NUD7 363 aaPredicted RBP13.59□□□□□ -0.23
PTCH1-213ENST00000546820 EVA1BQ9NVM1 165 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 UCKL1Q9NWZ5 548 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 NCKIPSDQ9NZQ3 722 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 CHMP2BQ9UQN3 213 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 VPS9D1Q9Y2B5 631 aa13.59□□□□□ -0.23
PTCH1-213ENST00000546820 MYLKQ15746 1914 aa13.58□□□□□ -0.23
PTCH1-213ENST00000546820 TP53BP1Q12888 1972 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-213ENST00000546820 CABIN1Q9Y6J0 2220 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 IGLV3-16A0A075B6K0 115 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 ZCWPW2A0A1B0GU75 182 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 ESYT3A0FGR9 886 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 SH3BP5O60239 455 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 POP7O75817 140 aaKnown RBP13.58□□□□□ -0.24
PTCH1-213ENST00000546820 SLU7O95391 586 aaKnown RBP13.58□□□□□ -0.24
PTCH1-213ENST00000546820 RHOXF2BP0C7M4 288 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 ARCN1P48444 511 aaKnown RBP13.58□□□□□ -0.24
PTCH1-213ENST00000546820 CTBSQ01459 385 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 CRYMQ14894 314 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 DBN1Q16643 649 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 INSCQ1MX18 579 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 KHDC1Q4VXA5 237 aaKnown RBP13.58□□□□□ -0.24
PTCH1-213ENST00000546820 RNF187Q5TA31 235 aaPredicted RBP13.58□□□□□ -0.24
PTCH1-213ENST00000546820 DET1Q7L5Y6 550 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 KANSL1Q7Z3B3 1105 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 AMZ2Q86W34 360 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 CCDC25Q86WR0 208 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 ANKMY2Q8IV38 441 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 NAXDQ8IW45 347 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 AGGF1Q8N302 714 aaeCLIP13.58□□□□□ -0.24
PTCH1-213ENST00000546820 FBXO36Q8NEA4 188 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 FAM46DQ8NEK8 389 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 OR4C6Q8NH72 309 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 SGF29Q96ES7 293 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 CFAP36Q96G28 342 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 RHOXF2Q9BQY4 288 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 TIMM29Q9BSF4 260 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 RTKNQ9BST9 563 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 FAM167BQ9BTA0 163 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 TSSK1BQ9BXA7 367 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 CLPBQ9H078 707 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 PPANQ9NQ55 473 aaKnown RBP13.58□□□□□ -0.24
PTCH1-213ENST00000546820 PRKAB1Q9Y478 270 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 MYO15AQ9UKN7 3530 aa13.58□□□□□ -0.24
PTCH1-213ENST00000546820 ZNF106Q9H2Y7 1883 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms