RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ISCUQ9H1K1 167 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 TRIM39Q9HCM9 518 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 SLC40A1Q9NP59 571 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 MLXIPLQ9NP71 852 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 AIPL1Q9NZN9 384 aa17.52■□□□□ 0.4
CLSTN3-214ENST00000542663 PCSK5Q92824 1860 aa17.52■□□□□ 0.39
CLSTN3-214ENST00000542663 OR52A4PA6NMU1 304 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 C21orf140B9A014 251 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 MTA2O94776 668 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 SLC25A14O95258 325 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 MT-ND3P03897 115 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 ZNF7P17097 686 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 NELFEP18615 380 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 CA4P22748 312 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 CCNCP24863 283 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 RPL10P27635 214 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 ARSEP51690 589 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 CHAF1BQ13112 559 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 GPR18Q14330 331 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 PIGHQ14442 188 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 IFI16Q16666 785 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 UGT8Q16880 541 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 INSCQ1MX18 579 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 TDRD12Q587J7 1177 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 TIGD7Q6NT04 549 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 PWWP2BQ6NUJ5 590 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 FAM199XQ6PEV8 388 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 ABRAXAS1Q6UWZ7 409 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 ZNF547Q8IVP9 402 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 TRIM48Q8IWZ4 208 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 NIPA2Q8N8Q9 360 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 CCHCR1Q8TD31 782 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 TRIM11Q96F44 468 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 TSGA13Q96PP4 275 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 MLPHQ9BV36 600 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 SPATA16Q9BXB7 569 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 POT1Q9NUX5 634 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 SEMA5BQ9P283 1151 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 EPHA6Q9UF33 1036 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 DNAJC16Q9Y2G8 782 aa17.51■□□□□ 0.39
CLSTN3-214ENST00000542663 CREBBPQ92793 2442 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 IGHV5-51A0A0C4DH38 117 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 PDZK1P1A8MUH7 402 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 GPR89AB7ZAQ6 455 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 GPR89BP0CG08 455 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 PGDP52209 483 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 IL10RAQ13651 578 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 DPYSL3Q14195 570 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 KRT81Q14533 505 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 KHDC1Q4VXA5 237 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 ZNF569Q5MCW4 686 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 PAPD7Q5XG87 772 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 ALS2CLQ60I27 953 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 IRGCQ6NXR0 463 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 TIMM29Q9BSF4 260 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 RAB33BQ9H082 229 aa17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 CUEDC1Q9NWM3 386 aaPredicted RBP17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 PCDHGA9Q9Y5G4 932 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-214ENST00000542663 LRBAP50851 2863 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 A1L4Q6 167 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 KMOO15229 486 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 SKILP12757 684 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 FOLR1P15328 257 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 CD86P42081 329 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 DRG2P55039 364 aaKnown RBP17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 DCDC1P59894 354 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 GALNT3Q14435 633 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 KCNAB1Q14722 419 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 ATP13A4Q4VNC1 1196 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 PRR30Q53SZ7 412 aaPredicted RBP17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 FAM182AQ5T1J6 154 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 C11orf96Q7Z7L8 435 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 LRRTM4Q86VH4 590 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 GLYATL1Q969I3 302 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 ZDHHC12Q96GR4 267 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 SLC41A2Q96JW4 573 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 ZSCAN5AQ9BUG6 496 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 SLC25A23Q9BV35 468 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 ZFYVE1Q9HBF4 777 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 LMBRD1Q9NUN5 540 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 CHMP5Q9NZZ3 219 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 NFKBIL1Q9UBC1 381 aaPredicted RBP17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 WDR37Q9Y2I8 494 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 PIKFYVEQ9Y2I7 2098 aa17.49■□□□□ 0.39
CLSTN3-214ENST00000542663 FER1L5A0AVI2 2057 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 MTX2O75431 263 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 PTPN4P29074 926 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 KLHL30Q0D2K2 578 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 SLC10A2Q12908 348 aaPredicted RBP17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 TUBB3Q13509 450 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 CCDC122Q5T0U0 273 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 AGAP9Q5VTM2 703 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 WASH2PQ6VEQ5 465 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 CERS6Q6ZMG9 384 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 RBM12BQ8IXT5 1001 aaKnown RBP17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 TRAM1L1Q8N609 369 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 THAP4Q8WY91 577 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 SEC14L1Q92503 715 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 FCRL4Q96PJ5 515 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 TRIB3Q96RU7 358 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms