RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 RABL3Q5HYI8 236 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 RNF219Q5W0B1 726 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 KANK2Q63ZY3 851 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 SLC8B1Q6J4K2 584 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 PRMT9Q6P2P2 845 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 GALNT7Q86SF2 657 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 GPR180Q86V85 440 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 CPNE9Q8IYJ1 553 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 LPCAT1Q8NF37 534 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 VPS33AQ96AX1 596 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 CENPNQ96H22 339 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 FEM1CQ96JP0 617 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 ZBED2Q9BTP6 218 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 BPIFA1Q9NP55 256 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 MTRRQ9UBK8 725 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 FAM50BQ9Y247 325 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 PDE4DIPQ5VU43 2346 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 EI24O14681 340 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 ACOX3O15254 700 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 GFAPP14136 432 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 HMGA1P17096 107 aaKnown RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 TUFMP49411 452 aaKnown RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 VEGFBP49765 207 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 CDKN1CP49918 316 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 BNIP2Q12982 314 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 ZNF177Q13360 481 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 ATP6AP1Q15904 470 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 FUT11Q495W5 492 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 DUS1LQ6P1R4 473 aaKnown RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 RAB44Q7Z6P3 723 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 IGSF21Q96ID5 467 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 TMEM175Q9BSA9 504 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 C9orf16Q9BUW7 83 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 SOX17Q9H6I2 414 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 SDR39U1Q9NRG7 319 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 GID8Q9NWU2 228 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 TUBA8Q9NY65 449 aaPredicted RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 TRPM5Q9NZQ8 1165 aa12.41□□□□□ -0.42
RNF4-222ENST00000541204 AGO1Q9UL18 857 aaKnown RBP12.41□□□□□ -0.42
RNF4-222ENST00000541204 H3BNC9 293 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 CLASP2O75122 1294 aaKnown RBP12.4□□□□□ -0.42
RNF4-222ENST00000541204 MT-ND1P03886 318 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 FGF1P05230 155 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 ZNF37AP17032 561 aaPredicted RBP12.4□□□□□ -0.42
RNF4-222ENST00000541204 LBPP18428 481 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 CES1P23141 567 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 NUP107P57740 925 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 SMARCB1Q12824 385 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 CARNMT1Q8N4J0 409 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 TNIP2Q8NFZ5 429 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 OR4K2Q8NGD2 314 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 LZICQ8WZA0 190 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 TADA1Q96BN2 335 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 TEX37Q96LM6 180 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 SLC22A12Q96S37 553 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 TTLL2Q9BWV7 592 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 NPLQ9BXD5 320 aaPredicted RBP12.4□□□□□ -0.42
RNF4-222ENST00000541204 SEMA4BQ9NPR2 832 aaPredicted RBP12.4□□□□□ -0.42
RNF4-222ENST00000541204 SEPT3Q9UH03 358 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 TIMM22Q9Y584 194 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 PCDHA9Q9Y5H5 950 aa12.4□□□□□ -0.42
RNF4-222ENST00000541204 TRIM64CA6NLI5 447 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 PRRG1O14668 218 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 CLOCKO15516 846 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 HLA-DPA1P20036 260 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 FMO4P31512 558 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 CDH4P55283 916 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 TLE2Q04725 743 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 PMS2P3Q13401 168 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 C16orf72Q14CZ0 275 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 TRIM60Q495X7 471 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 DHRS4L2Q6PKH6 230 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 BLOC1S3Q6QNY0 202 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 GLT6D1Q7Z4J2 308 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 BBS5Q8N3I7 341 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 TRPV3Q8NET8 790 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 OR4L1Q8NH43 312 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 BRSK1Q8TDC3 778 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 SNRNP27Q8WVK2 155 aaKnown RBP12.4□□□□□ -0.43
RNF4-222ENST00000541204 FATE1Q969F0 183 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 GFM2Q969S9 779 aaKnown RBP12.4□□□□□ -0.43
RNF4-222ENST00000541204 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.4□□□□□ -0.432e-6■■■■■ 54.9
RNF4-222ENST00000541204 ASB2Q96Q27 587 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 OSBPL6Q9BZF3 934 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 MAGEH1Q9H213 219 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 ALG2Q9H553 416 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 SCUBE2Q9NQ36 999 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 SLC52A3Q9NQ40 469 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 CATSPERZQ9NTU4 200 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 TSR3Q9UJK0 312 aaKnown RBP12.4□□□□□ -0.43
RNF4-222ENST00000541204 PTBP2Q9UKA9 531 aaKnown RBP12.4□□□□□ -0.43
RNF4-222ENST00000541204 V9GYQ6 96 aa12.4□□□□□ -0.43
RNF4-222ENST00000541204 ZFC3H1O60293 1989 aaKnown RBP12.4□□□□□ -0.43
RNF4-222ENST00000541204 GREB1Q4ZG55 1949 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 GPR39O43194 453 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 RPP40O75818 363 aaKnown RBP12.39□□□□□ -0.43
RNF4-222ENST00000541204 BAIAP3O94812 1187 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 ATE1O95260 518 aa12.39□□□□□ -0.43
RNF4-222ENST00000541204 RASAL1O95294 804 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms