RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 ARHGEF6Q15052 776 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 RNPS1Q15287 305 aaKnown RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 GPR68Q15743 365 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 TXNDC8Q6A555 127 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 CES5AQ6NT32 575 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 FAM122CQ6P4D5 195 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 SPSB3Q6PJ21 355 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 PRSS57Q6UWY2 283 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 ARMC9Q7Z3E5 817 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 GPAT4Q86UL3 456 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 CREBRFQ8IUR6 639 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 KIAA2013Q8IYS2 634 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 SCCPDHQ8NBX0 429 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 BEST2Q8NFU1 509 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 EXOC6Q8TAG9 804 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 GRAPLQ8TC17 118 aaPredicted RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 DNAAF4Q8WXU2 420 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 HTRA1Q92743 480 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 ZNF385AQ96PM9 386 aaKnown RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 SEC62Q99442 399 aaKnown RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 GAREM1Q9H706 876 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 CWC25Q9NXE8 425 aaPredicted RBP3.5□□□□□ -1.85
USP48-215ENST00000534705 HSPB7Q9UBY9 170 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 SLCO3A1Q9UIG8 710 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 ATP6V0A2Q9Y487 856 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 NFS1Q9Y697 457 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 ZNF609O15014 1411 aa3.5□□□□□ -1.85
USP48-215ENST00000534705 PARP14Q460N5 1801 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 UTYO14607 1347 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 A0A1W2PQM1 296 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 A0A1W2PRQ8 180 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 PLSCR5A0PG75 271 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 BICDL2A1A5D9 508 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 YDJCA8MPS7 323 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 TNPO2O14787 897 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 TSPAN4O14817 238 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 LINC01565O15544 149 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 HSPA12AO43301 675 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 TACC1O75410 805 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 BBOX1O75936 387 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 DDNO94850 711 aaPredicted RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 ZBTB11O95625 1053 aaPredicted RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 DDX58O95786 925 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 MT-CYBP00156 380 aaPredicted RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 POLBP06746 335 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 MMP2P08253 660 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 CAPN2P17655 700 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 DDX5P17844 614 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 CNTFP26441 200 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 HNRNPH1P31943 449 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 KRT9P35527 623 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 EFNA5P52803 228 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 NAP1L1P55209 391 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 UFM1P61960 85 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 RPP30P78346 268 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 HMGN5P82970 282 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 GABPB1Q06547 395 aaPredicted RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 COASYQ13057 564 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 DHX34Q14147 1143 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 NEDD9Q14511 834 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 VEPH1Q14D04 833 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 CALCRLQ16602 461 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 TCTN1Q2MV58 587 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 ALDH1L2Q3SY69 923 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 AMZ1Q400G9 498 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 SETMARQ53H47 684 aaPredicted RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 XKR9Q5GH70 373 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 SLC22A25Q6T423 547 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 SASS6Q6UVJ0 657 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.49□□□□□ -1.85
USP48-215ENST00000534705 C1orf122Q6ZSJ8 110 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 LINGO2Q7L985 606 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 ANKRD23Q86SG2 305 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 CNPY4Q8N129 248 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 AGBL3Q8NEM8 1001 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 LILRB1Q8NHL6 650 aaPredicted RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 LMO3Q8TAP4 145 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 HDAC2Q92769 488 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 ZBTB10Q96DT7 871 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 TRIM44Q96DX7 344 aaPredicted RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 BICD1Q96G01 975 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 ADGRG7Q96K78 797 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 EIF2AK1Q9BQI3 630 aaKnown RBP3.49□□□□□ -1.85
USP48-215ENST00000534705 C1QTNF4Q9BXJ3 329 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 TSPYL1Q9H0U9 437 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 BRF2Q9HAW0 419 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 OCIAD1Q9NX40 245 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 GGA3Q9NZ52 723 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 POLLQ9UGP5 575 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 KCNG2Q9UJ96 466 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 TNNQ9UQP3 1299 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 TMEM98Q9Y2Y6 226 aa3.49□□□□□ -1.85
USP48-215ENST00000534705 ZNFX1Q9P2E3 1918 aaKnown RBP3.48□□□□□ -1.85
USP48-215ENST00000534705 NOTCH3Q9UM47 2321 aa3.48□□□□□ -1.85
USP48-215ENST00000534705 DOCK1Q14185 1865 aa3.48□□□□□ -1.85
USP48-215ENST00000534705 DDX60LQ5H9U9 1706 aaKnown RBP3.48□□□□□ -1.85
USP48-215ENST00000534705 TEX13CA0A0J9YWL9 993 aa3.48□□□□□ -1.85
USP48-215ENST00000534705 MAGEA13PA6NCF6 341 aa3.48□□□□□ -1.85
USP48-215ENST00000534705 TTC36A6NLP5 189 aa3.48□□□□□ -1.85
USP48-215ENST00000534705 GRID2O43424 1007 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms