RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ACVR1Q04771 509 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 PCID2Q5JVF3 399 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 HES3Q5TGS1 186 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 CDCP2Q5VXM1 449 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 ANKRD22Q5VYY1 191 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 TMEM220Q6QAJ8 160 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 NLRP9Q7RTR0 991 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 NXPE1Q8N323 547 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 MAPK15Q8TD08 544 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 PATE1Q8WXA2 126 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 ULK4Q96C45 1275 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 CCDC3Q9BQI4 270 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 TIMM29Q9BSF4 260 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 ZCCHC2Q9C0B9 1178 aaKnown RBP19.58■□□□□ 0.72
CPSF1-209ENST00000532725 ABCG4Q9H172 646 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 CHRAC1Q9NRG0 131 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 LRIT1Q9P2V4 623 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 SLC2A6Q9UGQ3 507 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 TCAF1Q9Y4C2 921 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 DNMT3AQ9Y6K1 912 aaPredicted RBP19.58■□□□□ 0.72
CPSF1-209ENST00000532725 RNF215Q9Y6U7 377 aa19.58■□□□□ 0.72
CPSF1-209ENST00000532725 PLXNB3Q9ULL4 1909 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 FAM149AA5PLN7 773 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 A6NCN8 305 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 CASC3O15234 703 aaKnown RBP19.57■□□□□ 0.72
CPSF1-209ENST00000532725 NUDT21O43809 227 aaKnown RBP19.57■□□□□ 0.72
CPSF1-209ENST00000532725 JUPP14923 745 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 PNLIPP16233 465 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 MSH3P20585 1137 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 CASQ1P31415 396 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 MAZP56270 477 aaKnown RBP19.57■□□□□ 0.72
CPSF1-209ENST00000532725 B4GALNT1Q00973 533 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 CACNG1Q06432 222 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 GTF2H3Q13889 308 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 IYDQ6PHW0 289 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 SYT10Q6XYQ8 523 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 PIANPQ8IYJ0 282 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 MCUQ8NE86 351 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 PEX13Q92968 403 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 HDAC10Q969S8 669 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 CCDC74AQ96AQ1 378 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 SGF29Q96ES7 293 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 IL22Q9GZX6 179 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 BFARQ9NZS9 450 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 CRLS1Q9UJA2 301 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 TPRP12270 2363 aaKnown RBP19.57■□□□□ 0.72
CPSF1-209ENST00000532725 MYLKQ15746 1914 aa19.57■□□□□ 0.72
CPSF1-209ENST00000532725 ZNF106Q9H2Y7 1883 aaKnown RBP19.56■□□□□ 0.72
CPSF1-209ENST00000532725 CHD8Q9HCK8 2581 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 AKAP13Q12802 2813 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 IGLV3-16A0A075B6K0 115 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 TRBV23OR9-2A0A075B6M9 112 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 CCDC162PA2VCL2 907 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 SGTAO43765 313 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 KCNJ13O60928 360 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 POP7O75817 140 aaKnown RBP19.56■□□□□ 0.72
CPSF1-209ENST00000532725 MT-CO3P00414 261 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 PRSS56P0CW18 603 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 PAFAH1B1P43034 410 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 CRADDP78560 199 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 SARNPP82979 210 aaKnown RBP19.56■□□□□ 0.72
CPSF1-209ENST00000532725 ZRANB3Q5FWF4 1079 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 CAND1Q86VP6 1230 aaKnown RBP19.56■□□□□ 0.72
CPSF1-209ENST00000532725 SERPINA9Q86WD7 417 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 TRAPPC5Q8IUR0 188 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 SFRP1Q8N474 314 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 DCBLD1Q8N8Z6 715 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 CCDC97Q96F63 343 aaPredicted RBP19.56■□□□□ 0.72
CPSF1-209ENST00000532725 ZNF514Q96K75 400 aaPredicted RBP19.56■□□□□ 0.72
CPSF1-209ENST00000532725 PRDM8Q9NQV8 689 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 ZDHHC3Q9NYG2 299 aa19.56■□□□□ 0.72
CPSF1-209ENST00000532725 OR51F1A6NGY5 319 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 OR2AG2A6NM03 316 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 PPM1DO15297 605 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 SNX2O60749 519 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 AVILO75366 819 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 TMEM63AO94886 807 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 ACRV1P26436 265 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 MGAT1P26572 445 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 AKT1P31749 480 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 TARDBPQ13148 414 aaKnown RBP eCLIP19.55■□□□□ 0.72
CPSF1-209ENST00000532725 CAMK2BQ13554 666 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 PPP1R7Q15435 360 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 INSCQ1MX18 579 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 PLA2G4EQ3MJ16 856 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 TAS2R42Q7RTR8 314 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 ZNF438Q7Z4V0 828 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 KLHL7Q8IXQ5 586 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 NAT8LQ8N9F0 302 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 PPHLN1Q8NEY8 458 aaKnown RBP19.55■□□□□ 0.72
CPSF1-209ENST00000532725 NAT14Q8WUY8 206 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 HEXDCQ8WVB3 486 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 SGSM3Q96HU1 749 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 COPS8Q99627 209 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 KIFC1Q9BW19 673 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 TMEM121BQ9BXQ6 578 aaPredicted RBP19.55■□□□□ 0.72
CPSF1-209ENST00000532725 TREX1Q9NSU2 369 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.55■□□□□ 0.72
CPSF1-209ENST00000532725 CLCA2Q9UQC9 943 aa19.55■□□□□ 0.72
CPSF1-209ENST00000532725 DNAJC16Q9Y2G8 782 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms