RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 P2RX5Q93086 422 aa4□□□□□ -1.77
CD44-235ENST00000532339 RNF125Q96EQ8 232 aa4□□□□□ -1.77
CD44-235ENST00000532339 C7orf26Q96N11 449 aa4□□□□□ -1.77
CD44-235ENST00000532339 CDCA3Q99618 268 aaPredicted RBP4□□□□□ -1.77
CD44-235ENST00000532339 NPAS1Q99742 590 aa4□□□□□ -1.77
CD44-235ENST00000532339 POMKQ9H5K3 350 aa4□□□□□ -1.77
CD44-235ENST00000532339 STN1Q9H668 368 aaKnown RBP4□□□□□ -1.77
CD44-235ENST00000532339 TLE6Q9H808 572 aa4□□□□□ -1.77
CD44-235ENST00000532339 HYPKQ9NX55 129 aa4□□□□□ -1.77
CD44-235ENST00000532339 HOXC10Q9NYD6 342 aa4□□□□□ -1.77
CD44-235ENST00000532339 ANKMY1Q9P2S6 941 aa4□□□□□ -1.77
CD44-235ENST00000532339 AASSQ9UDR5 926 aa4□□□□□ -1.77
CD44-235ENST00000532339 TSPYL4Q9UJ04 414 aa4□□□□□ -1.77
CD44-235ENST00000532339 FBXO2Q9UK22 296 aaPredicted RBP4□□□□□ -1.77
CD44-235ENST00000532339 KLK13Q9UKR3 277 aa4□□□□□ -1.77
CD44-235ENST00000532339 GDAQ9Y2T3 454 aa4□□□□□ -1.77
CD44-235ENST00000532339 CYP46A1Q9Y6A2 500 aa4□□□□□ -1.77
CD44-235ENST00000532339 APC2O95996 2303 aa4□□□□□ -1.77
CD44-235ENST00000532339 ANKRD18BA2A2Z9 1011 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 IFITM10A6NMD0 228 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 STMND1H3BQB6 276 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 I6L893 689 aaPredicted RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 GRM8O00222 908 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 VWA5AO00534 786 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 PEX12O00623 359 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 DHX16O60231 1041 aaKnown RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 TMEM63AO94886 807 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 RTN3O95197 1032 aaPredicted RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 SLC25A27O95847 323 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 HLA-DQA2P01906 255 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 LINC00271P0C7V0 271 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 HOXB9P17482 250 aaPredicted RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 MAGEA9P43362 315 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 RFX5P48382 616 aaPredicted RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 PCP4P48539 62 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 CYP2J2P51589 502 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 ZBTB16Q05516 673 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 TRAF2Q12933 501 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 COG2Q14746 738 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 GPR68Q15743 365 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 TSTQ16762 297 aaKnown RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 IZUMO4Q1ZYL8 232 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 PRICKLE4Q2TBC4 344 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 PLK5Q496M5 336 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 ZNF628Q5EBL2 1059 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 FSCBQ5H9T9 825 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 CCDC30Q5VVM6 783 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 CES5AQ6NT32 575 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 DENND1BQ6P3S1 775 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 CFAP161Q6P656 301 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 LRRC8DQ7L1W4 858 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 TICAM2Q86XR7 235 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 TMEM217Q8N7C4 229 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 ANKRD44Q8N8A2 993 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 LRRC57Q8N9N7 239 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 CMASQ8NFW8 434 aaPredicted RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 VN1R2Q8NFZ6 395 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 UCMAQ8WVF2 138 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 TOP1MTQ969P6 601 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 SIN3AQ96ST3 1273 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 CHCHD6Q9BRQ6 235 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 FUZQ9BT04 418 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 POLDIP3Q9BY77 421 aaKnown RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 FRMD8Q9BZ67 464 aaPredicted RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 CLPBQ9H078 707 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 PDE11AQ9HCR9 933 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 DDX4Q9NQI0 724 aaKnown RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 TLR8Q9NR97 1041 aaKnown RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 SLC22A11Q9NSA0 550 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 OLA1Q9NTK5 396 aaKnown RBP3.99□□□□□ -1.77
CD44-235ENST00000532339 TBC1D22BQ9NU19 505 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 IRAK4Q9NWZ3 460 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 PCDHGB1Q9Y5G3 927 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 NF1P21359 2839 aa3.99□□□□□ -1.77
CD44-235ENST00000532339 COL6A6A6NMZ7 2263 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 LRRK2Q5S007 2527 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 ASTN1O14525 1302 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 A0A1W2PPH5 198 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 TCRBV7S3A2A0A539 114 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 F5H6K3 240 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 LIASO43766 372 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 USO1O60763 962 aaKnown RBP3.98□□□□□ -1.77
CD44-235ENST00000532339 F9P00740 461 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 ZNF806P0C7X5 589 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 LYL1P12980 280 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 CSRP1P21291 193 aaKnown RBP3.98□□□□□ -1.77
CD44-235ENST00000532339 DNAJB1P25685 340 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 GGT5P36269 586 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 PGM1P36871 562 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 MTHFRP42898 656 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 KCNC3Q14003 757 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 CAVIN4Q5BKX8 364 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 FAM171A1Q5VUB5 890 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 C8orf82Q6P1X6 216 aaPredicted RBP3.98□□□□□ -1.77
CD44-235ENST00000532339 C4orf50Q6ZRC1 276 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 NEK10Q6ZWH5 1172 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 H1FNTQ75WM6 255 aaPredicted RBP3.98□□□□□ -1.77
CD44-235ENST00000532339 ZNF367Q7RTV3 350 aa3.98□□□□□ -1.77
CD44-235ENST00000532339 TLK2Q86UE8 772 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms