RNA–Protein interactions for RNA: ENST00000531466.1

PTPRK-220, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5

Gene PTPRK, Length 311 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-220ENST00000531466 IRAK2O43187 625 aa3.83□□□□□ -1.8
PTPRK-220ENST00000531466 LDHAP00338 332 aaKnown RBP3.83□□□□□ -1.8
PTPRK-220ENST00000531466 EDN1P05305 212 aa3.83□□□□□ -1.8
PTPRK-220ENST00000531466 FAM157CP0CG43 387 aa3.83□□□□□ -1.8
PTPRK-220ENST00000531466 DEKP35659 375 aaKnown RBP3.83□□□□□ -1.8
PTPRK-220ENST00000531466 PAPOLAP51003 745 aaKnown RBP3.83□□□□□ -1.8
PTPRK-220ENST00000531466 NFIL3Q16649 462 aa3.83□□□□□ -1.8
PTPRK-220ENST00000531466 CACNA2D4Q7Z3S7 1137 aa3.83□□□□□ -1.8
PTPRK-220ENST00000531466 RDM1Q8NG50 284 aa3.83□□□□□ -1.8
PTPRK-220ENST00000531466 DNAAF4Q8WXU2 420 aa3.83□□□□□ -1.8
PTPRK-220ENST00000531466 APOBEC3GQ9HC16 384 aaKnown RBP3.83□□□□□ -1.8
PTPRK-220ENST00000531466 SCINQ9Y6U3 715 aa3.83□□□□□ -1.8
PTPRK-220ENST00000531466 SMCHD1A6NHR9 2005 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 UTYO14607 1347 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 IFRD1O00458 451 aaPredicted RBP3.82□□□□□ -1.8
PTPRK-220ENST00000531466 KCNN4O15554 427 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 CREB3O43889 395 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 NBNO60934 754 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 TRMUO75648 421 aaKnown RBP3.82□□□□□ -1.8
PTPRK-220ENST00000531466 NGFP01138 241 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 TFAP2AP05549 437 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 KRT19P08727 400 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 ANXA7P20073 488 aaKnown RBP3.82□□□□□ -1.8
PTPRK-220ENST00000531466 CCR10P46092 362 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 GNAQP50148 359 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 SNX16P57768 344 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 MAD2L1Q13257 205 aaPredicted RBP3.82□□□□□ -1.8
PTPRK-220ENST00000531466 PEX6Q13608 980 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 COL28A1Q2UY09 1125 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 ARHGEF16Q5VV41 709 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 PACS1Q6VY07 963 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 C11orf53Q8IXP5 236 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 CCDC13Q8IYE1 715 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 SPICE1Q8N0Z3 855 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 RHNO1Q9BSD3 238 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 PCGF1Q9BSM1 259 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 USP44Q9H0E7 712 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 INTS2Q9H0H0 1204 aaKnown RBP3.82□□□□□ -1.8
PTPRK-220ENST00000531466 PELI2Q9HAT8 420 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 HSF4Q9ULV5 492 aa3.82□□□□□ -1.8
PTPRK-220ENST00000531466 ANKRD66B4E2M5 251 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 CCER2I3L3R5 266 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 LIFP15018 202 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 UGT1A1P22309 533 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 WNT5AP41221 380 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 GABRB2P47870 512 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 USP41Q3LFD5 358 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 ASPRV1Q53RT3 343 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 PAPD4Q6PIY7 484 aaKnown RBP3.81□□□□□ -1.8
PTPRK-220ENST00000531466 Q6ZSR9 355 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 DPPA4Q7L190 304 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 RRM2BQ7LG56 351 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 ZNF843Q8N446 348 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 ZNF611Q8N823 705 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 TRIM44Q96DX7 344 aaPredicted RBP3.81□□□□□ -1.8
PTPRK-220ENST00000531466 KLHL15Q96M94 604 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 ACOX2Q99424 681 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 PIGQQ9BRB3 760 aa3.81□□□□□ -1.8
PTPRK-220ENST00000531466 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.81□□□□□ -1.8
PTPRK-220ENST00000531466 SNAP23O00161 211 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 WISP2O76076 250 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 NFKBIAP25963 317 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 SP3Q02447 781 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 FOXD4Q12950 439 aaPredicted RBP3.8□□□□□ -1.8
PTPRK-220ENST00000531466 GRAPQ13588 217 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 C6orf141Q5SZD1 244 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 ALS2CLQ60I27 953 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 ATG16L1Q676U5 607 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 Q75L30 129 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 ATG9AQ7Z3C6 839 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 GBGT1Q8N5D6 347 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 UTP15Q8TED0 518 aaKnown RBP3.8□□□□□ -1.8
PTPRK-220ENST00000531466 PPP1R13BQ96KQ4 1090 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 SLX1AQ9BQ83 275 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 TMEM47Q9BQJ4 181 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 SYT15Q9BQS2 421 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 LAT2Q9GZY6 243 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 MAF1Q9H063 256 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 HCN3Q9P1Z3 774 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 TAGLN3Q9UI15 199 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 AAR2Q9Y312 384 aaKnown RBP3.8□□□□□ -1.8
PTPRK-220ENST00000531466 PCNX3Q9H6A9 2034 aa3.8□□□□□ -1.8
PTPRK-220ENST00000531466 A0A087WW49 117 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 SLCO1B7G3V0H7 640 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 TNPO2O14787 897 aaKnown RBP3.79□□□□□ -1.8
PTPRK-220ENST00000531466 DUS4LO95620 317 aaKnown RBP3.79□□□□□ -1.8
PTPRK-220ENST00000531466 LIPFP07098 398 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 COPB2P35606 906 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 KRTAP10-1P60331 282 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 UFM1P61960 85 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 DUOXA1Q1HG43 343 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 PAQR6Q6TCH4 344 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 ISCA2Q86U28 154 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 ENAHQ8N8S7 591 aaPredicted RBP3.79□□□□□ -1.8
PTPRK-220ENST00000531466 OMA1Q96E52 524 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 SMC6Q96SB8 1091 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 ARPC5LQ9BPX5 153 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 RTP3Q9BQQ7 232 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 SLC28A3Q9HAS3 691 aa3.79□□□□□ -1.8
PTPRK-220ENST00000531466 CNOT7Q9UIV1 285 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms