RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 FCGRTP55899 365 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 TECRLQ5HYJ1 363 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 HID1Q8IV36 788 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 NPWQ8N729 165 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 ISOC1Q96CN7 298 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 KCNA7Q96RP8 456 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 TMEM209Q96SK2 561 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 YTHDF1Q9BYJ9 559 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 MTMR10Q9NXD2 777 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 NUDT4Q9NZJ9 180 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 PCDHGC4Q9Y5F7 938 aa8.34□□□□□ -1.07
LIMCH1-216ENST00000512820 UGT2B11O75310 529 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 ECI2O75521 394 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 SCELO95171 688 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 CDH1P12830 882 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 TACR2P21452 398 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 TUFMP49411 452 aaKnown RBP8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 PWP1Q13610 501 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 PGM2L1Q6PCE3 622 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 RBFAQ8N0V3 343 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 KDM1BQ8NB78 822 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 MCFD2Q8NI22 146 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 NELL1Q92832 810 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 POP5Q969H6 163 aaKnown RBP8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 TMEM74Q96NL1 305 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 EMILIN2Q9BXX0 1053 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 MEAF6Q9HAF1 191 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 RASSF1Q9NS23 344 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 PADI3Q9ULW8 664 aa8.34□□□□□ -1.08
LIMCH1-216ENST00000512820 A0A1W2PP18 115 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 FZD9O00144 591 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 IGSF6O95976 241 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 PFKPQ01813 784 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 FOXM1Q08050 763 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 GTF2H2Q13888 395 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 GTF2H2CQ6P1K8 395 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TMC5Q6UXY8 1006 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 KBTBD7Q8WVZ9 684 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 ZFYVE19Q96K21 471 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CDK15Q96Q40 435 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 MRM3Q9HC36 420 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 GALPQ9UBC7 116 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 DNAJB9Q9UBS3 223 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 FKBPLQ9UIM3 349 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CNOT11Q9UKZ1 510 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SAMD4AQ9UPU9 718 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 HS3ST4Q9Y661 456 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 H0YJX3 145 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 J3QRK9 145 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TOR1BO14657 336 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 KERAO60938 352 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CAPN15O75808 1086 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 PRKCGP05129 697 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 ACADVLP49748 655 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 ATP4BP51164 291 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 UFM1P61960 85 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 GNA12Q03113 381 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SOX4Q06945 474 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CNTN1Q12860 1018 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF284Q2VY69 593 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 OGFOD2Q6N063 350 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 PPP4R4Q6NUP7 873 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 IFNLR1Q8IU57 520 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 RAET1EQ8TD07 263 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC13A3Q8WWT9 602 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 MRPS31Q92665 395 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 MYDGFQ969H8 173 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 BIRC7Q96CA5 298 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 FBXL8Q96CD0 374 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SPATA17Q96L03 361 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 KLHL32Q96NJ5 620 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TSEN34Q9BSV6 310 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 PCDH12Q9NPG4 1184 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CCM2LQ9NUG4 571 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 DYRK1BQ9Y463 629 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 PRORSD1PA6NEY8 169 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CXCR6O00574 342 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 NDUFS2O75306 463 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 RSL1D1O76021 490 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC25A14O95258 325 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 HOXD10P28358 340 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CD68P34810 354 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC26A3P40879 764 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CRATP43155 626 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 MLLT6P55198 1093 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 RAB15P59190 212 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 C1DQ13901 141 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 FAM174BQ3ZCQ3 159 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 MSANTD2Q6P1R3 559 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 FBXL19Q6PCT2 694 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SVOPLQ8N434 492 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CAPSLQ8WWF8 208 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SOCS4Q8WXH5 440 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TMBIM1Q969X1 311 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 ABHD8Q96I13 439 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TSGA13Q96PP4 275 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 C16orf70Q9BSU1 422 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TBKBP1A7MCY6 615 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 RGS10O43665 173 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CLCN2P51788 898 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms