RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ITIH5Q86UX2 942 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 TMEM199Q8N511 208 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 EFHBQ8N7U6 833 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 SIDT2Q8NBJ9 832 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 OR7D4Q8NG98 312 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 TANKQ92844 425 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 C1orf74Q96LT6 269 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 BDH2Q9BUT1 245 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 ARMC7Q9H6L4 198 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 FAIMQ9NVQ4 179 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 TMEM248Q9NWD8 314 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 C1orf232A0A0U1RR37 186 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 WASH4PA8MWX3 477 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 NOL3O60936 208 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 SERPINF2P08697 491 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 TCF3P15923 654 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 IL7RP16871 459 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 DNAJC14Q6Y2X3 702 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 PIANPQ8IYJ0 282 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 ZNF683Q8IZ20 524 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 FBXO30Q8TB52 745 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 PROKR1Q8TCW9 393 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 EEF1AKMT1Q8WVE0 214 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 SMURF2Q9HAU4 748 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 B4GALT3O60512 393 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 CYP11A1P05108 521 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 PBX3P40426 434 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 ZFP36L2P47974 494 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 PIK3CGP48736 1102 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 HK3P52790 923 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 TPD52P55327 224 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 LAPTM5Q13571 262 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 AASDHQ4L235 1098 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 CCNYL2Q5T2Q4 361 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 SCML4Q8N228 414 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 DTWD1Q8N5C7 304 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 PLEKHA8Q96JA3 519 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 MARCH2Q9P0N8 246 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 WARS2Q9UGM6 360 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 SLC27A5Q9Y2P5 690 aa9.17□□□□□ -0.94
LIMCH1-215ENST00000512632 ESRRBO95718 433 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 FGF1P05230 155 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 HLA-DPA1P20036 260 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 RGRP47804 291 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 PRKG2Q13237 762 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 SERINC3Q13530 473 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 Q6ZSR9 355 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 SPATA19Q7Z5L4 167 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ZNF280BQ86YH2 543 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 TEX26Q8N6G2 289 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 FAM86B1Q8N7N1 296 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 METTL6Q8TCB7 284 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 TMBIM1Q969X1 311 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 NSMCE3Q96MG7 304 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 BRCA1P38398 1863 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 LCHNA4D1U4 455 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 M0QZQ0 153 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 NOBOXO60393 691 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 G6PDP11413 515 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ADARB1P78563 741 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 IL10RBQ08334 325 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 IRAK1BP1Q5VVH5 260 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ANKRD26P1Q6NSI1 321 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 FAM126BQ8IXS8 530 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ATP6V0D2Q8N8Y2 350 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 DDHD1Q8NEL9 900 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 OSCP1Q8WVF1 389 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 FIG4Q92562 907 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ACDQ96AP0 544 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 PARK7Q99497 189 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 TBCDQ9BTW9 1192 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 NTN4Q9HB63 628 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 EXD2Q9NVH0 621 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 PCDHGC4Q9Y5F7 938 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 PCDHGA11Q9Y5H2 935 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 CORINQ9Y5Q5 1042 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 BRCA2P51587 3418 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 DCKP27707 260 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 TPP2P29144 1249 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 HLCSP50747 726 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 SUOXP51687 545 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ARSFP54793 590 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 NFATC3Q12968 1075 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 IL27RAQ6UWB1 636 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 GPRIN3Q6ZVF9 776 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 USP50Q70EL3 339 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 GALNT7Q86SF2 657 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ITFG1Q8TB96 612 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 FBXO32Q969P5 355 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ERLEC1Q96DZ1 483 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 LINGO1Q96FE5 620 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ZBED2Q9BTP6 218 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 DGCR6LQ9BY27 220 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 INTS10Q9NVR2 710 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 ZMYM5Q9UJ78 669 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 PCTPQ9UKL6 214 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 CAPN1P07384 714 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 RPS17P08708 135 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 UROSP10746 265 aa9.16□□□□□ -0.94
LIMCH1-215ENST00000512632 CCNA2P20248 432 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms