RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MKLN1Q9UL63 735 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 KCNH4Q9UQ05 1017 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 A0A0U1RQS6 177 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 G3V2T6 193 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 SYN3O14994 580 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PMM2O15305 246 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PPM1BO75688 479 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 IFNA14P01570 189 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 HOXD4P09016 255 aaPredicted RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 ERVFC1P60507 584 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 OSTNP61366 133 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PRKCDQ05655 676 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 FSCN1Q16658 493 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 NOL9Q5SY16 702 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 JADE1Q6IE81 842 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 CNSTQ6PJW8 725 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 FBXO33Q7Z6M2 555 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 TIGD4Q8IY51 512 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 FNDC5Q8NAU1 212 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PYCR2Q96C36 320 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 TRMT61AQ96FX7 289 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 PPIL3Q9H2H8 161 aaKnown RBP11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 NARFQ9UHQ1 456 aa11.95□□□□□ -0.5
LIMCH1-213ENST00000511496 LOC100130705A0A1B0GUX0 176 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 TLL1O43897 1013 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 SLC22A5O76082 557 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 TSPAN8P19075 237 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 ACO1P21399 889 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 MYL9P24844 172 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 SHMT1P34896 483 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 GSK3BP49841 420 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 ERVK-8P63133 956 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 RAB6CQ53S08 254 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 SPESP1Q6UW49 350 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 PELI3Q8N2H9 469 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 MARVELD3Q96A59 401 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 TMCO6Q96DC7 493 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 C12orf57Q99622 126 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 RAB6CQ9H0N0 254 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 DPP7Q9UHL4 492 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 USP18Q9UMW8 372 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 TRAV20A0A0B4J274 112 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 A0A0J9YYE9 177 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 CLRN2A0PK11 232 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 NEMP2A6NFY4 417 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 CYP4B1P13584 511 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 KCNA5P22460 613 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 RPS3P23396 243 aaKnown RBP eCLIP11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 CD6P30203 668 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 UGT2B10P36537 528 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 MTHFRP42898 656 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 APLP1P51693 650 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 MAP2K6P52564 334 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 ISL1P61371 349 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 CYP24A1Q07973 514 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 CDK5R2Q13319 367 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 NFE2L1Q14494 772 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 FLYWCH1Q4VC44 716 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 SH3PXD2AQ5TCZ1 1133 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 CORO6Q6QEF8 472 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 TMPRSS9Q7Z410 1059 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 MCUQ8NE86 351 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 FRS2Q8WU20 508 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 NXPE3Q969Y0 559 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 TMEM74Q96NL1 305 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 SPATA9Q9BWV2 254 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 ALG2Q9H553 416 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 ANKHQ9HCJ1 492 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 GIMAP2Q9UG22 337 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 STOML2Q9UJZ1 356 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 MINPP1Q9UNW1 487 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 DNMT3AQ9Y6K1 912 aaPredicted RBP11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 PLIN4Q96Q06 1357 aa11.94□□□□□ -0.5
LIMCH1-213ENST00000511496 DSCR3O14972 297 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 STX7O15400 261 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 GADD45AP24522 165 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SIM2Q14190 667 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 ELOAQ14241 798 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SMN1Q16637 294 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 ARMCX4Q5H9R4 360 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 ZYG11AQ6WRX3 759 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 FUNDC1Q8IVP5 155 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SPNS2Q8IVW8 549 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 AURKBQ96GD4 344 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 TEKT5Q96M29 485 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SLC6A17Q9H1V8 727 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 FAM83DQ9H4H8 585 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 TMOD3Q9NYL9 352 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 TBX20Q9UMR3 447 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 TCP10L2B9ZVM9 353 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 DLX3O60479 287 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 RNGTTO60942 597 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SLC6A2P23975 617 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 LIPEQ05469 1076 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 ZMAT1Q5H9K5 638 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 FAM102BQ5T8I3 360 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 RADILQ96JH8 1075 aa11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SECISBP2Q96T21 854 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 SDHCQ99643 169 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-213ENST00000511496 APOBEC3GQ9HC16 384 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms