RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MID1O15344 667 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 NDUFS4O43181 175 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 DKC1O60832 514 aaKnown RBP eCLIP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZWINTO95229 277 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 GJA1P17302 382 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 S1PR1P21453 382 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 KCNA5P22460 613 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 CORO1AP31146 461 aaKnown RBP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMPOP42166 694 aaKnown RBP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 CAPZA2P47755 286 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 TUBA1BP68363 451 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 UBXN2AP68543 259 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 SIRPAP78324 504 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 LTBQ06643 244 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 FAM98BQ52LJ0 330 aaKnown RBP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 SETMARQ53H47 684 aaPredicted RBP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 C9orf152Q5JTZ5 239 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 LDB1Q86U70 411 aaPredicted RBP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 PM20D2Q8IYS1 436 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 GCSAMQ8N6F7 178 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 OR5R1Q8NH85 324 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 DUSP19Q8WTR2 217 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 NEUROG1Q92886 237 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 PIGTQ969N2 578 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZBTB9Q96C00 473 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 CNDP2Q96KP4 475 aaKnown RBP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF385AQ96PM9 386 aaKnown RBP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 PCYT2Q99447 389 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 GFI1Q99684 422 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 CCDC106Q9BWC9 280 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 IL25Q9H293 177 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 SLCO5A1Q9H2Y9 848 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMEM30AQ9NV96 361 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 TAS2R14Q9NYV8 317 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 GDE1Q9NZC3 331 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 LARSQ9P2J5 1176 aaKnown RBP3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 B3GALT5Q9Y2C3 310 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 TRPV2Q9Y5S1 764 aa3.98□□□□□ -1.77
HMGB1P28-201ENST00000507778 PDS5AQ29RF7 1337 aaKnown RBP3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 PRAG1Q86YV5 1406 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 MAGEB17A8MXT2 336 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 PROB1E7EW31 1015 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 H0YIN7 160 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMEM189-UBE2V1I3L0A0 370 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 SLC16A5O15375 505 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 IPO8O15397 1037 aaKnown RBP3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 PMS2P2O95744 297 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 BCL10O95999 233 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 LINC00271P0C7V0 271 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 VPREB1P12018 145 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 NR2F2P24468 414 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 NMBRP28336 390 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 HTR6P50406 440 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 CTSCP53634 463 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 DLG1Q12959 904 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 UBE2V1Q13404 147 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 TRNP1Q6NT89 227 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 CREB3L2Q70SY1 520 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 HAUS6Q7Z4H7 955 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 GALNT13Q8IUC8 556 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 SMRP1Q8NCR6 262 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 SPATA22Q8NHS9 363 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 TBC1D16Q8TBP0 767 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 PPP4R1Q8TF05 950 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 SLC44A1Q8WWI5 657 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 LPGAT1Q92604 370 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 ABTB1Q969K4 478 aaPredicted RBP3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 TMEM19Q96HH6 336 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF479Q96JC4 524 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 DGAT2Q96PD7 388 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 BAG1Q99933 345 aaPredicted RBP3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZPBPQ9BS86 351 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 TM6SF1Q9BZW5 370 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 PPIL3Q9H2H8 161 aaKnown RBP3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 RABEP2Q9H5N1 569 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 RCC2Q9P258 522 aaKnown RBP3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 BCCIPQ9P287 314 aaKnown RBP eCLIP3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 ANAPC2Q9UJX6 822 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 KCNS2Q9ULS6 477 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 ZNF711Q9Y462 761 aa3.97□□□□□ -1.77
HMGB1P28-201ENST00000507778 A0A1W2PP11 408 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 TCRBV21S2A2A0A5A6 115 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 LILRA5A6NI73 299 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 SRRM3A6NNA2 597 aaPredicted RBP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 UBE2CO00762 179 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 INSIG1O15503 277 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF500O60304 480 aaPredicted RBP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 CAMTA2O94983 1202 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 NTN1O95631 604 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 NGFRP08138 427 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 SNHG28P0DPA3 235 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 DAOP14920 347 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 EEF1DP29692 281 aaKnown RBP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 GNL1P36915 607 aaPredicted RBP3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 BRWD1-AS2P59051 145 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 CD81P60033 236 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 COG7P83436 770 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 GAGE2BQ13066 116 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 ALCAMQ13740 583 aa3.96□□□□□ -1.78
HMGB1P28-201ENST00000507778 SNTB1Q13884 538 aaKnown RBP3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms