RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 KIR2DS5Q14953 304 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 PPP1R7Q15435 360 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 TRIP13Q15645 432 aaPredicted RBP16.45■□□□□ 0.22
SNCA-209ENST00000506244 PLA2G4EQ3MJ16 856 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 ZRANB3Q5FWF4 1079 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 CDCP2Q5VXM1 449 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 ARMC3Q5W041 872 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 AFTPHQ6ULP2 937 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 UNQ6494/PRO21346Q6UXR6 183 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 RBM44Q6ZP01 1051 aaKnown RBP16.45■□□□□ 0.22
SNCA-209ENST00000506244 CCNJLQ8IV13 435 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 NAGSQ8N159 534 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 NXPE1Q8N323 547 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 GRAMD1AQ96CP6 724 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 COPS8Q99627 209 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 KLC4Q9NSK0 619 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 LRIT1Q9P2V4 623 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 TCAF1Q9Y4C2 921 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 PLEKHM1Q9Y4G2 1056 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 PCYT1BQ9Y5K3 369 aaPredicted RBP16.45■□□□□ 0.22
SNCA-209ENST00000506244 DNMT3AQ9Y6K1 912 aaPredicted RBP16.45■□□□□ 0.22
SNCA-209ENST00000506244 RNF215Q9Y6U7 377 aa16.45■□□□□ 0.22
SNCA-209ENST00000506244 ARHGEF17Q96PE2 2063 aaPredicted RBP16.45■□□□□ 0.22
SNCA-209ENST00000506244 F3P13726 295 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 GRIA1P42261 906 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 MAGEA6P43360 314 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 GPR3P46089 330 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 FASLGP48023 281 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 NPY2RP49146 381 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 KCNJ11Q14654 390 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 CCDC38Q502W7 563 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 PCID2Q5JVF3 399 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 TSTD2Q5T7W7 516 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 ZNF438Q7Z4V0 828 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 SPRED1Q7Z699 444 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 ZNF547Q8IVP9 402 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 SFRP1Q8N474 314 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 ARL14Q8N4G2 192 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 GATA6Q92908 595 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 NXPE2Q96DL1 559 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 CDKN2AIPNLQ96HQ2 116 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 CAPZA3Q96KX2 299 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 GFM1Q96RP9 751 aaKnown RBP16.44■□□□□ 0.22
SNCA-209ENST00000506244 TTC1Q99614 292 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 VPS37BQ9H9H4 285 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 ZDHHC3Q9NYG2 299 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 TBC1D29Q9UFV1 150 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 PLXNB3Q9ULL4 1909 aa16.44■□□□□ 0.22
SNCA-209ENST00000506244 TRBV5-4A0A0C4DH59 114 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 FAM149AA5PLN7 773 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 PDZK1P1A8MUH7 402 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 CCDC188H7C350 402 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 CCL22O00626 93 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 SNX2O60749 519 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 RPLP0P05388 317 aaKnown RBP16.43■□□□□ 0.22
SNCA-209ENST00000506244 IDSP22304 550 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 ACRV1P26436 265 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 SESN2P58004 480 aaPredicted RBP16.43■□□□□ 0.22
SNCA-209ENST00000506244 PRAMEP78395 509 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 DMPKQ09013 629 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 TARDBPQ13148 414 aaKnown RBP eCLIP16.43■□□□□ 0.22
SNCA-209ENST00000506244 NR1D2Q14995 579 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 CLPPQ16740 277 aaPredicted RBP16.43■□□□□ 0.22
SNCA-209ENST00000506244 BCL7AQ4VC05 210 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 LYPLAL1Q5VWZ2 237 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 LRRC8BQ6P9F7 803 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 TMEM220Q6QAJ8 160 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 TAS2R42Q7RTR8 314 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 SLC9B2Q86UD5 537 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 AMZ2Q86W34 360 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 RASGEF1AQ8N9B8 481 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 SLC37A2Q8TED4 501 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 SLCO2A1Q92959 643 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 SH3KBP1Q96B97 665 aa16.43■□□□□ 0.22
SNCA-209ENST00000506244 XAB2Q9HCS7 855 aaKnown RBP16.43■□□□□ 0.22
SNCA-209ENST00000506244 SPEGQ15772 3267 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 CCDC78A2IDD5 438 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 A6NCN8 305 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 OR2AG2A6NM03 316 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 D6RAR5 112 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 F8W8V4 182 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 TMX2-CTNND1H3BSU7 103 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 QSOX1O00391 747 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 NTN3O00634 580 aaPredicted RBP16.42■□□□□ 0.22
SNCA-209ENST00000506244 CSO75390 466 aaKnown RBP16.42■□□□□ 0.22
SNCA-209ENST00000506244 CASQ1P31415 396 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 PPARGP37231 505 aaPredicted RBP16.42■□□□□ 0.22
SNCA-209ENST00000506244 HALP42357 657 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 CTSCP53634 463 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 CLDN6P56747 220 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 HHEXQ03014 270 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 ACVR1Q04771 509 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 AARS2Q5JTZ9 985 aaKnown RBP16.42■□□□□ 0.22
SNCA-209ENST00000506244 FNBP1LQ5T0N5 605 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 AGAP9Q5VTM2 703 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 IYDQ6PHW0 289 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 WASH2PQ6VEQ5 465 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 SYDE1Q6ZW31 735 aaPredicted RBP16.42■□□□□ 0.22
SNCA-209ENST00000506244 CREG2Q8IUH2 290 aa16.42■□□□□ 0.22
SNCA-209ENST00000506244 TRIM48Q8IWZ4 208 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms