RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PRAMEF1O95521 474 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 CPNE6O95741 557 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 GPR3P46089 330 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 CLCNKAP51800 687 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 TMPRSS15P98073 1019 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 HHEXQ03014 270 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 CCDC173Q0VFZ6 552 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 SNX1Q13596 522 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 ITGA9Q13797 1035 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 GTF2H3Q13889 308 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 SIX1Q15475 284 aaPredicted RBP24.32■■□□□ 1.48
UPF3A-209ENST00000492270 P3H1Q32P28 736 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 IGF2-ASQ6U949 168 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 ZNF574Q6ZN55 896 aaPredicted RBP24.32■■□□□ 1.48
UPF3A-209ENST00000492270 RAB11FIP2Q7L804 512 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 PRUNE1Q86TP1 453 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 PIM3Q86V86 326 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 TRAPPC5Q8IUR0 188 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 RASGEF1AQ8N9B8 481 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 UBE2Q2Q8WVN8 375 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 SLC46A1Q96NT5 459 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 TIMM29Q9BSF4 260 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 STRADBQ9C0K7 418 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 LRRC40Q9H9A6 602 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 KCNK4Q9NYG8 393 aa24.32■■□□□ 1.48
UPF3A-209ENST00000492270 SCHIP1Q9P0W5 487 aaPredicted RBP24.32■■□□□ 1.48
UPF3A-209ENST00000492270 PRR19A6NJB7 356 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 CCL22O00626 93 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 PLD2O14939 933 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 CRTAMO95727 393 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 TPH1P17752 444 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 RBMS1P29558 406 aaKnown RBP24.31■■□□□ 1.48
UPF3A-209ENST00000492270 CSF2RBP32927 897 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 ZNF140P52738 457 aaPredicted RBP24.31■■□□□ 1.48
UPF3A-209ENST00000492270 CTSCP53634 463 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 XIAPP98170 497 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 CFHR1Q03591 330 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 NFATC2Q13469 925 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 SEPT7Q16181 437 aaKnown RBP24.31■■□□□ 1.48
UPF3A-209ENST00000492270 LDLRAP1Q5SW96 308 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 PHF19Q5T6S3 580 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 FBXO39Q8N4B4 442 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 ZNF398Q8TD17 642 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 NAT14Q8WUY8 206 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 NAF1Q96HR8 494 aaKnown RBP24.31■■□□□ 1.48
UPF3A-209ENST00000492270 SMOXQ9NWM0 555 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 LHX6Q9UPM6 363 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 ZFYVE26Q68DK2 2539 aa24.31■■□□□ 1.48
UPF3A-209ENST00000492270 TMX2-CTNND1H3BSU7 103 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 LDB2O43679 373 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 NRDCO43847 1150 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 SRP72O76094 671 aaKnown RBP24.3■■□□□ 1.48
UPF3A-209ENST00000492270 TNFSF15O95150 251 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 AP2A1O95782 977 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 IFNB1P01574 187 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 HOXB3P14651 431 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-209ENST00000492270 ETS1P14921 441 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 PCBP4P57723 403 aaKnown RBP24.3■■□□□ 1.48
UPF3A-209ENST00000492270 ERVPABLB-1P60509 514 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 GLIS1Q8NBF1 620 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 TRIM58Q8NG06 486 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 CCDC97Q96F63 343 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-209ENST00000492270 TTC25Q96NG3 672 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 SLC38A3Q99624 504 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 FRMD8P1Q9BZ68 369 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-209ENST00000492270 ASB8Q9H765 288 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 SARS2Q9NP81 518 aaKnown RBP24.3■■□□□ 1.48
UPF3A-209ENST00000492270 THSD1Q9NS62 852 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 TMEM9Q9P0T7 183 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 ZNF148Q9UQR1 794 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 LOXL2Q9Y4K0 774 aa24.3■■□□□ 1.48
UPF3A-209ENST00000492270 OR2AG2A6NM03 316 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 CDRT15L2A8MXV6 281 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 SLC2A4P14672 509 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 ABCG1P45844 678 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 C16orf72Q14CZ0 275 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 SLC9B2Q86UD5 537 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 RCBTB1Q8NDN9 531 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 LRRC45Q96CN5 670 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 FEZ2Q9UHY8 353 aaPredicted RBP24.29■■□□□ 1.48
UPF3A-209ENST00000492270 PIKFYVEQ9Y2I7 2098 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 FAM208BQ5VWN6 2430 aa24.29■■□□□ 1.48
UPF3A-209ENST00000492270 KIR2DS5A0A0G2JLQ3 304 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 A0A0G2JNG1 304 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 IGHV5-10-1A0A0J9YXX1 117 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 GOLGA6L3A6NEY3 463 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 PDZK1P1A8MUH7 402 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 KIR2DS3K7RE56 304 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 RRP8O43159 456 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 ZW10O43264 779 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 BRAFP15056 766 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 ITIH1P19827 911 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 MPSTP25325 297 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 RPL10P27635 214 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 AKT1P31749 480 aa24.28■■□□□ 1.48
UPF3A-209ENST00000492270 STIP1P31948 543 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 DRG2P55039 364 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 UBE2IP63279 158 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 EIF3IQ13347 325 aaKnown RBP24.28■■□□□ 1.48
UPF3A-209ENST00000492270 POU6F1Q14863 301 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms