RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 KRCC1Q9NPI7 259 aaPredicted RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 EQTNQ9NQ60 294 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 MTRRQ9UBK8 725 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 GAGE2DQ9UEU5 116 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 TINAGQ9UJW2 476 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 PAM16Q9Y3D7 125 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 SNX5Q9Y5X3 404 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 POMT1Q9Y6A1 747 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 TMEM272A0A1B0GTI8 110 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 OR6C76A6NM76 312 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 B4DGG1 531 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 CYR61O00622 381 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 ZIC3O60481 467 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 NDUFB8O95169 186 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 KCNK5O95279 499 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 PENKP01210 267 aaPredicted RBP5.08□□□□□ -1.6
UPF3B-203ENST00000478840 NAGAP17050 411 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 BDKRB2P30411 391 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 STX2P32856 288 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 PCGF2P35227 344 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 BMXP51813 675 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 PPP2R2BQ00005 443 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 RBPJQ06330 500 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 MELKQ14680 651 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 NR1D2Q14995 579 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 TRIP6Q15654 476 aaKnown RBP5.08□□□□□ -1.6
UPF3B-203ENST00000478840 MEP1AQ16819 746 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 VWC2Q2TAL6 325 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 ZRANB3Q5FWF4 1079 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 C6orf136Q5SQH8 315 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 ZNF534Q76KX8 674 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 RD3Q7Z3Z2 195 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 ZC3HC1Q86WB0 502 aaKnown RBP5.08□□□□□ -1.6
UPF3B-203ENST00000478840 NUP93Q8N1F7 819 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 FBXO39Q8N4B4 442 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 PCDH20Q8N6Y1 951 aaKnown RBP5.08□□□□□ -1.6
UPF3B-203ENST00000478840 PAPD5Q8NDF8 572 aaKnown RBP5.08□□□□□ -1.6
UPF3B-203ENST00000478840 EXD1Q8NHP7 514 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 C16orf52Q8NHV5 167 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 WDR20Q8TBZ3 569 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 WFIKKN2Q8TEU8 576 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 ATL1Q8WXF7 558 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 LPAR1Q92633 364 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 ORAI1Q96D31 301 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 MLPHQ9BV36 600 aaPredicted RBP5.08□□□□□ -1.6
UPF3B-203ENST00000478840 MOV10L1Q9BXT6 1211 aaKnown RBP5.08□□□□□ -1.6
UPF3B-203ENST00000478840 KRTAP4-5Q9BYR2 181 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 DNAI2Q9GZS0 605 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 FAM234AQ9H0X4 552 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 RIOX1Q9H6W3 641 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 LIPT1Q9Y234 373 aa5.08□□□□□ -1.6
UPF3B-203ENST00000478840 IGHV4-28A0A0C4DH34 117 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 BICDL2A1A5D9 508 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 HTR3EA5X5Y0 456 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 VWA5AO00534 786 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 ITM2AO43736 263 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 FMO6PO60774 539 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 GOSR1O95249 250 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 LCATP04180 440 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 TGFB3P10600 412 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 SRCP12931 536 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 DNASE1P24855 282 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 CAPZA1P52907 286 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 NAGLUP54802 743 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 TUBB4BP68371 445 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 CDK3Q00526 305 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 TRAF1Q13077 416 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 SLMAPQ14BN4 828 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 MEP1BQ16820 701 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 Q4G0T1 1027 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 ODF2Q5BJF6 829 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 ZDHHC20Q5W0Z9 365 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 SHQ1Q6PI26 577 aaKnown RBP5.07□□□□□ -1.6
UPF3B-203ENST00000478840 ATG9AQ7Z3C6 839 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 SPATA19Q7Z5L4 167 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 CHERPQ8IWX8 916 aaKnown RBP5.07□□□□□ -1.6
UPF3B-203ENST00000478840 ARFGAP1Q8N6T3 406 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 EMC1Q8N766 993 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 C7orf57Q8NEG2 295 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 TBC1D16Q8TBP0 767 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 CORO2AQ92828 525 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 PTP4A1Q93096 173 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 ERLEC1Q96DZ1 483 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 URB1-AS1Q96HZ7 61 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 FERMT1Q9BQL6 677 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 RCC2Q9P258 522 aaKnown RBP5.07□□□□□ -1.6
UPF3B-203ENST00000478840 HEY2Q9UBP5 337 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 ING1Q9UK53 422 aaPredicted RBP5.07□□□□□ -1.6
UPF3B-203ENST00000478840 NME7Q9Y5B8 376 aa5.07□□□□□ -1.6
UPF3B-203ENST00000478840 ATXN2Q99700 1313 aaKnown RBP5.06□□□□□ -1.6
UPF3B-203ENST00000478840 ARHGEF37A1IGU5 675 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 KCNU1A8MYU2 1149 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 H0YAE9 185 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 DNM1LO00429 736 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 PTGESO14684 152 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 HS3ST1O14792 307 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 CLIC2O15247 247 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 NDUFS7O75251 213 aa5.06□□□□□ -1.6
UPF3B-203ENST00000478840 ZFYP08048 801 aaPredicted RBP5.06□□□□□ -1.6
UPF3B-203ENST00000478840 OR52Z1P0C646 297 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms