RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MAK16Q9BXY0 300 aaKnown RBP12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NHEJ1Q9H9Q4 299 aaPredicted RBP12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SEMA5BQ9P283 1151 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TUBD1Q9UJT1 453 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 INTUQ9ULD6 942 aa12.07□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 DOPEY2Q9Y3R5 2298 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 GOLGA6L3A6NEY3 463 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNF891A8MT65 544 aaPredicted RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PPP1R12AO14974 1030 aaPredicted RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KMOO15229 486 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TOX3O15405 576 aaPredicted RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NKX2-8O15522 239 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 AKR1B10O60218 316 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TPM3P06753 285 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 HADHBP55084 474 aaKnown RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 GFERP55789 205 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 NFKB2Q00653 900 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ADCY2Q08462 1091 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ATP13A5Q4VNC0 1218 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SNAP47Q5SQN1 464 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 BORAQ6PGQ7 559 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 B4GALNT4Q76KP1 1039 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 LRRTM4Q86VH4 590 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PHYKPLQ8IUZ5 450 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RHOT1Q8IXI2 618 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TTC30BQ8N4P2 665 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RNF25Q96BH1 459 aaPredicted RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CATSPER2Q96P56 530 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CTRCQ99895 268 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 GPR63Q9BZJ6 419 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 FAM117AQ9C073 453 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RAB33BQ9H082 229 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TRIT1Q9H3H1 467 aaKnown RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 STN1Q9H668 368 aaKnown RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SLC40A1Q9NP59 571 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 IL26Q9NPH9 171 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SPTLC3Q9NUV7 552 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 DDX56Q9NY93 547 aaKnown RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SAE1Q9UBE0 346 aaPredicted RBP12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 EPHA6Q9UF33 1036 aa12.06□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 SPTBP11277 2137 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 A0A0A6YYK5 440 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 GAPDHSO14556 408 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MFAP3LO75121 409 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PPFIA2O75334 1257 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MTX2O75431 263 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 STK17BO94768 372 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 UBXN7O94888 489 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CDK14O94921 469 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 COMTP21964 271 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CA5AP35218 305 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 POLE2P56282 527 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TMEM115Q12893 351 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TBX2Q13207 712 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PCSK7Q16549 785 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZFYVE27Q5T4F4 411 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ALS2CLQ60I27 953 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ATG14Q6ZNE5 492 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PRICKLE2Q7Z3G6 844 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KLHL6Q8WZ60 621 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MRGPRX2Q96LB1 330 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 DEF6Q9H4E7 631 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TRABDQ9H4I3 376 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNHIT6Q9NWK9 470 aaKnown RBP12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 IL17CQ9P0M4 197 aa12.05□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CYSRT1A8MQ03 144 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 POLR1CO15160 346 aaPredicted RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CBFA2T2O43439 604 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KCNJ13O60928 360 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PMPCBO75439 489 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 VIPP01282 170 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 KRT1P04264 644 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PECAM1P16284 738 aaPredicted RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 F8A1P23610 371 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 STAT5AP42229 794 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 WNT3AP56704 352 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 DMPKQ09013 629 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CRTC3Q6UUV7 619 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 BZW1Q7L1Q6 419 aaKnown RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 PRSS42Q7Z5A4 293 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RFX6Q8HWS3 928 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 RBM12BQ8IXT5 1001 aaKnown RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 UNC5BQ8IZJ1 945 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 TFB1MQ8WVM0 346 aaKnown RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 OXNAD1Q96HP4 312 aaPredicted RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 CCDC42Q96M95 316 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 FCRL5Q96RD9 977 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 EFHD1Q9BUP0 239 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ZNF768Q9H5H4 540 aaKnown RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 GPN2Q9H9Y4 310 aaPredicted RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 BPIFA1Q9NP55 256 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 POT1Q9NUX5 634 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 UBP1Q9NZI7 540 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 FAM153AQ9UHL3 310 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 WDR37Q9Y2I8 494 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 HYOU1Q9Y4L1 999 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 HEMK1Q9Y5R4 338 aaPredicted RBP12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 ALG6Q9Y672 507 aa12.04□□□□□ -0.48
MSH5-SAPCD1-205ENST00000476085 MED13Q9UHV7 2174 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms