RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 PIGHQ14442 188 aaPredicted RBP12.39□□□□□ -0.43
SKA3-206ENST00000475251 KRT81Q14533 505 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 IFI16Q16666 785 aaKnown RBP12.39□□□□□ -0.43
SKA3-206ENST00000475251 NADK2Q4G0N4 442 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 IRGCQ6NXR0 463 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 ABRAXAS1Q6UWZ7 409 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 WASH2PQ6VEQ5 465 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 FAM92BQ6ZTR7 304 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 LRRTM4Q86VH4 590 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 KMT5CQ86Y97 462 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 SIDT2Q8NBJ9 832 aaKnown RBP12.39□□□□□ -0.43
SKA3-206ENST00000475251 MAML1Q92585 1016 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 WDR24Q96S15 920 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 MLPHQ9BV36 600 aaPredicted RBP12.39□□□□□ -0.43
SKA3-206ENST00000475251 SPATA16Q9BXB7 569 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 TRIM7Q9C029 511 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 ING2Q9H160 280 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 SLC40A1Q9NP59 571 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 SLAMF7Q9NQ25 335 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 CASS4Q9NQ75 786 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 WASH6PQ9NQA3 447 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 RBM22Q9NW64 420 aaKnown RBP eCLIP12.39□□□□□ -0.435e-6■■□□□ 13.6
SKA3-206ENST00000475251 ZNF624Q9P2J8 865 aaPredicted RBP12.39□□□□□ -0.43
SKA3-206ENST00000475251 NOTCH2Q04721 2471 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 UTP20O75691 2785 aaKnown RBP12.39□□□□□ -0.43
SKA3-206ENST00000475251 UNC79Q9P2D8 2635 aa12.39□□□□□ -0.43
SKA3-206ENST00000475251 A1L4Q6 167 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 LRRC10BA6NIK2 292 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 ARGFXA6NJG6 315 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 ANKRD66B4E2M5 251 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 CHUKO15111 745 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 CPNE3O75131 537 aaKnown RBP12.38□□□□□ -0.43
SKA3-206ENST00000475251 PRLP01236 227 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 ZNF7P17097 686 aaPredicted RBP12.38□□□□□ -0.43
SKA3-206ENST00000475251 IDSP22304 550 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 CCNCP24863 283 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 IL1R2P27930 398 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 HALP42357 657 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 ARL4DP49703 201 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 CCL11P51671 97 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 DCDC1P59894 354 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 GALNT2Q10471 571 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 GPR18Q14330 331 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 INPP5JQ15735 1006 aaPredicted RBP12.38□□□□□ -0.43
SKA3-206ENST00000475251 SEPT7Q16181 437 aaKnown RBP12.38□□□□□ -0.43
SKA3-206ENST00000475251 ASIC2Q16515 512 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 AGAP9Q5VTM2 703 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 CRTC3Q6UUV7 619 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 RHOT1Q8IXI2 618 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.38□□□□□ -0.43
SKA3-206ENST00000475251 RSC1A1Q92681 617 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 RNF31Q96EP0 1072 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 ZFYVE1Q9HBF4 777 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 PCDH18Q9HCL0 1135 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 SCHIP1Q9P0W5 487 aaPredicted RBP12.38□□□□□ -0.43
SKA3-206ENST00000475251 MAP10Q9P2G4 905 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 MYO1AQ9UBC5 1043 aa12.38□□□□□ -0.43
SKA3-206ENST00000475251 TCP11X1B4DZS4 312 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 KIF1CO43896 1103 aaKnown RBP12.37□□□□□ -0.43
SKA3-206ENST00000475251 VEGFDO43915 354 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 KCNJ13O60928 360 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 MX2P20592 715 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 LPOP22079 712 aaPredicted RBP12.37□□□□□ -0.43
SKA3-206ENST00000475251 MYL5Q02045 173 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 QPCTQ16769 361 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 PLA2G4EQ3MJ16 856 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 CPZQ66K79 652 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 PWWP2BQ6NUJ5 590 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 JMJD6Q6NYC1 403 aaPredicted RBP12.37□□□□□ -0.43
SKA3-206ENST00000475251 ADGRG6Q86SQ4 1221 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 TRAM1L1Q8N609 369 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 PRR7Q8TB68 274 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 ARRDC2Q8TBH0 407 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 GLYATL1Q969I3 302 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 SLC41A2Q96JW4 573 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 ZNF514Q96K75 400 aaPredicted RBP12.37□□□□□ -0.43
SKA3-206ENST00000475251 CD180Q99467 661 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 HAUS4Q9H6D7 363 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 SEMA5BQ9P283 1151 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 NFKBIL1Q9UBC1 381 aaPredicted RBP12.37□□□□□ -0.43
SKA3-206ENST00000475251 FARSAQ9Y285 508 aaKnown RBP12.37□□□□□ -0.43
SKA3-206ENST00000475251 DNAJC16Q9Y2G8 782 aa12.37□□□□□ -0.43
SKA3-206ENST00000475251 SSU72P8A0A1W2PR75 194 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 MFSD11O43934 449 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 CDK14O94921 469 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 TIAF1O95411 115 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 JCHAINP01591 159 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 KLK3P07288 261 aaPredicted RBP12.36□□□□□ -0.43
SKA3-206ENST00000475251 RPL10P27635 214 aaKnown RBP12.36□□□□□ -0.43
SKA3-206ENST00000475251 GSDMDP57764 484 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 CHAF1BQ13112 559 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 GTF2H3Q13889 308 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 ESPL1Q14674 2120 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 PAFAH1B3Q15102 231 aaKnown RBP12.36□□□□□ -0.43
SKA3-206ENST00000475251 EIF2S3LQ2VIR3 472 aaKnown RBP12.36□□□□□ -0.43
SKA3-206ENST00000475251 IZUMO3Q5VZ72 239 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 ALS2CLQ60I27 953 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 NIPA2Q8N8Q9 360 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 OR8K5Q8NH50 307 aa12.36□□□□□ -0.43
SKA3-206ENST00000475251 MR1Q95460 341 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms