RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 POLR2CP19387 275 aaPredicted RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 NFKBIAP25963 317 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 SERPINA4P29622 427 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 CORO1AP31146 461 aaKnown RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 RYKP34925 604 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 GNALP38405 381 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 PNPLA4P41247 253 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 HNRNPH2P55795 449 aaKnown RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 SNRPD1P62314 119 aaKnown RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 THOC5Q13769 683 aaKnown RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 STARD3Q14849 445 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 CTU2Q2VPK5 515 aaKnown RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 KHDRBS2Q5VWX1 349 aaKnown RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 PAQR6Q6TCH4 344 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 IL20RBQ6UXL0 311 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 SLC36A4Q6YBV0 504 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 ZNF704Q6ZNC4 412 aaPredicted RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 SH2D5Q6ZV89 423 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 CHD1LQ86WJ1 897 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 SLC44A2Q8IWA5 706 aaPredicted RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 CCDC146Q8IYE0 955 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 ZNF34Q8IZ26 560 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 GJC3Q8NFK1 279 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 FAM71BQ8TC56 605 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 PIGTQ969N2 578 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 C3orf49Q96BT1 292 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 LINGO1Q96FE5 620 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 SH3GL2Q99962 352 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 HAUS8Q9BT25 410 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 RAB11FIP5Q9BXF6 653 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 TRIM6Q9C030 488 aaPredicted RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 SMYD2Q9NRG4 433 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 KCND3Q9UK17 655 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 PYGO1Q9Y3Y4 419 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 CACNA1SQ13698 1873 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 PNPLA6Q8IY17 1366 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 PIK3R4Q99570 1358 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 COL5A3P25940 1745 aaPredicted RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 DDX60Q8IY21 1712 aaKnown RBP1.68□□□□□ -2.14
CCDC39-203ENST00000473854 NWD2Q9ULI1 1742 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 MYH6P13533 1939 aa1.68□□□□□ -2.14
CCDC39-203ENST00000473854 RREB1Q92766 1687 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 NCAPD2Q15021 1401 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 ABCC6O95255 1503 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 CICQ96RK0 1608 aaPredicted RBP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 A0A0U1RQF3 1178 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 BCL2L11O43521 198 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 ZFAND5O76080 213 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 CLPTM1O96005 669 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 FAM106CPP0CH98 169 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 ITGAXP20702 1163 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 ZBTB25P24278 435 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 AHRP35869 848 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 TECP42680 631 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 PTPN9P43378 593 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 TNNT2P45379 298 aaPredicted RBP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 AK2P54819 239 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 NR1H2P55055 460 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 AP2B1P63010 937 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 PDCLQ13371 301 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 PTK2BQ14289 1009 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 CCDC96Q2M329 555 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 KRTCAP3Q53RY4 240 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 HSP90AB2PQ58FF8 381 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 FFAR4Q5NUL3 377 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 TTC22Q5TAA0 569 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 DMKNQ6E0U4 476 aaPredicted RBP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 KSR2Q6VAB6 950 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 RRAGAQ7L523 313 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 CCDC117Q8IWD4 279 aaPredicted RBP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 ZNF611Q8N823 705 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 OR52I2Q8NH67 350 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 SCAMP5Q8TAC9 235 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 RND1Q92730 232 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 RFT1Q96AA3 541 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 ZC3HAV1LQ96H79 300 aaKnown RBP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 TMEM41AQ96HV5 264 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 MTERF1Q99551 399 aaKnown RBP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 SYT15Q9BQS2 421 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 ZBTB20Q9HC78 741 aaPredicted RBP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 OBP2BQ9NPH6 170 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 ABCB10Q9NRK6 738 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 GPR83Q9NYM4 423 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 RCOR1Q9UKL0 485 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 KCNJ14Q9UNX9 436 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 TNNQ9UQP3 1299 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 KNSTRNQ9Y448 316 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 A3GALT2U3KPV4 340 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 BRWD3Q6RI45 1802 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 MYH2Q9UKX2 1941 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 MRC1P22897 1456 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 COL14A1Q05707 1796 aaKnown RBP1.67□□□□□ -2.14
CCDC39-203ENST00000473854 CDK5RAP2Q96SN8 1893 aa1.67□□□□□ -2.14
CCDC39-203ENST00000473854 RGS12O14924 1447 aa1.66□□□□□ -2.14
CCDC39-203ENST00000473854 AHDC1Q5TGY3 1603 aaPredicted RBP1.66□□□□□ -2.14
CCDC39-203ENST00000473854 LTBP4Q8N2S1 1624 aa1.66□□□□□ -2.14
CCDC39-203ENST00000473854 C4AP0C0L4 1744 aa1.66□□□□□ -2.14
CCDC39-203ENST00000473854 C4BP0C0L5 1744 aa1.66□□□□□ -2.14
CCDC39-203ENST00000473854 ARAP2Q8WZ64 1704 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms