RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CAPNS2Q96L46 248 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 GPR63Q9BZJ6 419 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 ZMYM5Q9UJ78 669 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 RAB26Q9ULW5 256 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 RNF11Q9Y3C5 154 aa18.9■□□□□ 0.62
VIM-203ENST00000469543 ARIH1Q9Y4X5 557 aaPredicted RBP18.9■□□□□ 0.62
VIM-203ENST00000469543 ESRRBO95718 433 aa18.89■□□□□ 0.62
VIM-203ENST00000469543 CNPP09543 421 aaKnown RBP18.89■□□□□ 0.62
VIM-203ENST00000469543 NOGQ13253 232 aa18.89■□□□□ 0.62
VIM-203ENST00000469543 PAF1Q8N7H5 531 aa18.89■□□□□ 0.62
VIM-203ENST00000469543 LKAAEAR1Q8TD35 194 aa18.89■□□□□ 0.62
VIM-203ENST00000469543 ADAMTS19Q8TE59 1207 aa18.89■□□□□ 0.62
VIM-203ENST00000469543 CIPCQ9C0C6 399 aa18.89■□□□□ 0.62
VIM-203ENST00000469543 INTS7Q9NVH2 962 aaKnown RBP18.89■□□□□ 0.62
VIM-203ENST00000469543 EVLQ9UI08 416 aaPredicted RBP18.89■□□□□ 0.62
VIM-203ENST00000469543 YIPF1Q9Y548 306 aa18.89■□□□□ 0.62
VIM-203ENST00000469543 PRSS21Q9Y6M0 314 aa18.89■□□□□ 0.62
VIM-203ENST00000469543 SNX2O60749 519 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 CAPNS1P04632 268 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 TTPAP49638 278 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 CLCN7P51798 805 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 SMARCB1Q12824 385 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 TIGD2Q4W5G0 525 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 ARMC3Q5W041 872 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 Q6ZSR9 355 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 C17orf80Q9BSJ5 609 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 TNKS2Q9H2K2 1166 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 CWH43Q9H720 699 aa18.89■□□□□ 0.61
VIM-203ENST00000469543 CLPTM1O96005 669 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 PYGLP06737 847 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 PIM1P11309 404 aaPredicted RBP18.88■□□□□ 0.61
VIM-203ENST00000469543 GJA1P17302 382 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 HOXD10P28358 340 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 SLC7A1P30825 629 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 ATP6V0D1P61421 351 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 TPGS1Q6ZTW0 290 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 LRRC43Q8N309 656 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 GALNT15Q8N3T1 639 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 C2orf15Q8WU43 125 aaKnown RBP18.88■□□□□ 0.61
VIM-203ENST00000469543 CENPKQ9BS16 269 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 FAM192AQ9GZU8 254 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 NSUN3Q9H649 340 aaKnown RBP18.88■□□□□ 0.61
VIM-203ENST00000469543 ZNF334Q9HCZ1 680 aaPredicted RBP18.88■□□□□ 0.61
VIM-203ENST00000469543 IL17CQ9P0M4 197 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 ZFC3H1O60293 1989 aaKnown RBP18.88■□□□□ 0.61
VIM-203ENST00000469543 PRRG1O14668 218 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 KIF3CO14782 793 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 AHCYL1O43865 530 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 KIAA2013Q8IYS2 634 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 PLD4Q96BZ4 506 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 ASB2Q96Q27 587 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 TCF12Q99081 682 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 RIMKLBQ9ULI2 386 aa18.88■□□□□ 0.61
VIM-203ENST00000469543 ARHGAP10A1A4S6 786 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 CLDN7O95471 211 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 GNAO1P09471 354 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 GGT5P36269 586 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 PRKCQQ04759 706 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 NADK2Q4G0N4 442 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 NKAPQ8N5F7 415 aaKnown RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 FNDC5Q8NAU1 212 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 OR2T34Q8NGX1 318 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 OR2T3Q8NH03 318 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 ROPN1LQ96C74 230 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 AFF4Q9UHB7 1163 aaKnown RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 COMMD10Q9Y6G5 202 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 USP34Q70CQ2 3546 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 GBF1Q92538 1859 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 SYCE1LA8MT33 242 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 ABLIM3O94929 683 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 TRIM16O95361 564 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 CLIC3O95833 236 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 CAPN1P07384 714 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 PABPC4LP0CB38 370 aaKnown RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 HOXB8P17481 243 aaPredicted RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 ATP4BP51164 291 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 TRAP1Q12931 704 aaKnown RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 CDH18Q13634 790 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 NFYCQ13952 458 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 C6orf136Q5SQH8 315 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 CDK5RAP1Q96SZ6 601 aaKnown RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 MRPL9Q9BYD2 267 aaKnown RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 SMG9Q9H0W8 520 aaKnown RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 HIPK3Q9H422 1215 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 COMMD8Q9NX08 183 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 ZNF711Q9Y462 761 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 MYOFQ9NZM1 2061 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 PRAMEF1O95521 474 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 EFEMP2O95967 443 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 IDO1P14902 403 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 TBCELQ5QJ74 424 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 ACBD5Q5T8D3 534 aaPredicted RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 KLHDC10Q6PID8 442 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 SLC2A7Q6PXP3 512 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 ZBTB49Q6ZSB9 765 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 RALGPS2Q86X27 583 aaPredicted RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 APLFQ8IW19 511 aaPredicted RBP18.87■□□□□ 0.61
VIM-203ENST00000469543 PROKR1Q8TCW9 393 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 PXYLP1Q8TE99 480 aa18.87■□□□□ 0.61
VIM-203ENST00000469543 DEFB118Q96PH6 123 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms