RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CBX2Q14781 532 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 TRIP4Q15650 581 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 DGUOKQ16854 277 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 SYT16Q17RD7 645 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 SOWAHCQ53LP3 525 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 CCDC103Q8IW40 242 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 REM2Q8IYK8 340 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 PAPD5Q8NDF8 572 aaKnown RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 ZNF555Q8NEP9 628 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 OR2T11Q8NH01 316 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 FAM167AQ96KS9 214 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 DSN1Q9H410 356 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 POLR3BQ9NW08 1133 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 STAP1Q9ULZ2 295 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 CCDC162PA2VCL2 907 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 AP3D1O14617 1153 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 TSPAN1O60635 241 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 C22orf31O95567 290 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 HLA-DQB2P05538 268 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 MASP1P48740 699 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 POLD2P49005 469 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 ATP4BP51164 291 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 HERVK_113P63132 956 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 TMC5Q6UXY8 1006 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 PDZD4Q76G19 769 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 LILRB4Q8NHJ6 448 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 RORBQ92753 470 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 RNF34Q969K3 372 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 PYCR2Q96C36 320 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 ERVK-6Q9BXR3 956 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 EMILIN2Q9BXX0 1053 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 TRIM54Q9BYV2 358 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 RNF167Q9H6Y7 350 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 ZBTB20Q9HC78 741 aaPredicted RBP11.61□□□□□ -0.55
CPSF3-202ENST00000460593 TMEM30AQ9NV96 361 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 TRHDEQ9UKU6 1024 aa11.61□□□□□ -0.55
CPSF3-202ENST00000460593 PRMT5O14744 637 aaPredicted RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 GABARAPO95166 117 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 LCKP06239 509 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 CYP2C8P10632 490 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 CASP3P42574 277 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 YWHAHQ04917 246 aaPredicted RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 ILF2Q12905 390 aaKnown RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 VARS2Q5ST30 1063 aaKnown RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 DLK2Q6UY11 383 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 CYP2U1Q7Z449 544 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 P2RY8Q86VZ1 359 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 PTRH1Q86Y79 214 aaKnown RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 GALNT13Q8IUC8 556 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 DYNC2LI1Q8TCX1 351 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 S100ZQ8WXG8 99 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 VMP1Q96GC9 406 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 UBXN10Q96LJ8 280 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 NXF3Q9H4D5 531 aaKnown RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 TREX1Q9NSU2 369 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 LIMD1Q9UGP4 676 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 IKZF3Q9UKT9 509 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 TIMM13Q9Y5L4 95 aaPredicted RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 LCTP09848 1927 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 LOC100130705A0A1B0GUX0 176 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 ILVBLA1L0T0 632 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 GJB3O75712 270 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 DNTTP04053 509 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 CYBBP04839 570 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 PIRTP0C851 137 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 ZNF286BP0CG31 522 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 CXCR2P25025 360 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 EIF2DP41214 584 aaKnown RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 ISL1P61371 349 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 PHC1P78364 1004 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 CHRNB3Q05901 458 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 SEMA3BQ13214 749 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 FSCN1Q16658 493 aaKnown RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 SLC22A9Q8IVM8 553 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 TRIB2Q92519 343 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 CCDC126Q96EE4 140 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 BTN2A3PQ96KV6 586 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 THG1LQ9NWX6 298 aaKnown RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 CPA4Q9UI42 421 aa11.6□□□□□ -0.55
CPSF3-202ENST00000460593 INTS6Q9UL03 887 aaKnown RBP11.6□□□□□ -0.55
CPSF3-202ENST00000460593 TAF4O00268 1085 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 RAD51BO15315 384 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 MT-ND2P03891 347 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 DBTP11182 482 aaKnown RBP11.59□□□□□ -0.55
CPSF3-202ENST00000460593 TRPC1P48995 793 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 POLR2JP52435 117 aaKnown RBP11.59□□□□□ -0.55
CPSF3-202ENST00000460593 ITKQ08881 620 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 VAC14Q08AM6 782 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 SNX17Q15036 470 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 NPTX1Q15818 432 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 C9orf57Q5W0N0 161 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 CATSPERGQ6ZRH7 1159 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 PLD3Q8IV08 490 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 NLGN4XQ8N0W4 816 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 DEPDC4Q8N2C3 294 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 ATP6V0D2Q8N8Y2 350 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 MCFD2Q8NI22 146 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 AFG1LQ8WV93 481 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 MRGPRX2Q96LB1 330 aa11.59□□□□□ -0.55
CPSF3-202ENST00000460593 SLIRPQ9GZT3 109 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms