RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ACSL3O95573 720 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 SLC4A1P02730 911 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 CELA2BP08218 269 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 PHBP35232 272 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 SGCGQ13326 291 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 LAMB3Q13751 1172 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 NR0B2Q15466 257 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 MSS51Q4VC12 460 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 PRRT3Q5FWE3 981 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 HP1BP3Q5SSJ5 553 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 BEND6Q5SZJ8 279 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 KIAA1614Q5VZ46 1190 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 ARMC3Q5W041 872 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 INO80CQ6PI98 192 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 RANBP10Q6VN20 620 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 RBM44Q6ZP01 1051 aaKnown RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 CAPN12Q6ZSI9 719 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 GLT6D1Q7Z4J2 308 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 CLEC14AQ86T13 490 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 RELL1Q8IUW5 271 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 CCNJLQ8IV13 435 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 PHACTR4Q8IZ21 702 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 MPP5Q8N3R9 675 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 TP53I13Q8NBR0 393 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 BLOC1S5Q8TDH9 187 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 PTCD2Q8WV60 388 aaKnown RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 RAB7BQ96AH8 199 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 GRAMD1AQ96CP6 724 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 KLHL32Q96NJ5 620 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 RUFY1Q96T51 708 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 SUV39H2Q9H5I1 410 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 ARNT2Q9HBZ2 717 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 MBNL1Q9NR56 388 aaKnown RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 NINJ2Q9NZG7 142 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 NCKIPSDQ9NZQ3 722 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 HACD3Q9P035 362 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 SPASTQ9UBP0 616 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 ZC3H7BQ9UGR2 993 aaKnown RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 APOBEC3BQ9UH17 382 aaKnown RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 TCAF1Q9Y4C2 921 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 PTPN13Q12923 2485 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 TSPAN11A1L157 253 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 CAPN8A6NHC0 703 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 LMO7DNF2Z398 122 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 PYCARD-AS1I3L0S3 204 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 FZD6O60353 706 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 MMP20O60882 483 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 TCEA3O75764 348 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 TTC4O95801 387 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 PDHA1P08559 390 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 TSHRP16473 764 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 TPH1P17752 444 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 RBMS1P29558 406 aaKnown RBP12.06□□□□□ -0.48
PTPRF-208ENST00000437607 STX2P32856 288 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 CRADDP78560 199 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 CLN3Q13286 438 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 IHHQ14623 411 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 QPCTQ16769 361 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 PCID2Q5JVF3 399 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 C6orf132Q5T0Z8 1188 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 CERCAMQ5T4B2 595 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 DENND5AQ6IQ26 1287 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 FOXR1Q6PIV2 292 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 PALM2Q8IXS6 379 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 BTN2A2Q8WVV5 523 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 ZNF669Q96BR6 464 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-208ENST00000437607 ECHDC3Q96DC8 303 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 TBATAQ96M53 351 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 NSMCE3Q96MG7 304 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 SRPK1Q96SB4 655 aaKnown RBP12.06□□□□□ -0.48
PTPRF-208ENST00000437607 EBNA1BP2Q99848 306 aaKnown RBP12.06□□□□□ -0.48
PTPRF-208ENST00000437607 CCDC3Q9BQI4 270 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 WDR83Q9BRX9 315 aaKnown RBP12.06□□□□□ -0.48
PTPRF-208ENST00000437607 TXLNGYQ9BZA5 131 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 MRM3Q9HC36 420 aaKnown RBP12.06□□□□□ -0.48
PTPRF-208ENST00000437607 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.06□□□□□ -0.481e-7■■■□□ 18.6
PTPRF-208ENST00000437607 RABGEF1Q9UJ41 708 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 SOX13Q9UN79 622 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 TEX264Q9Y6I9 313 aa12.06□□□□□ -0.48
PTPRF-208ENST00000437607 NTN3O00634 580 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-208ENST00000437607 NEMP1O14524 444 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 YY2O15391 372 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 EFSO43281 561 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 RIPK2O43353 540 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 CRTAMO95727 393 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 PRLP01236 227 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 PRKCGP05129 697 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 POLBP06746 335 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 ABHD2P08910 425 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 GSTA2P09210 222 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 PIRTP0C851 137 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 PAMP19021 973 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 HSD17B3P37058 310 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 THOP1P52888 689 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 YPEL5P62699 121 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 POLR2LP62875 67 aaKnown RBP12.05□□□□□ -0.48
PTPRF-208ENST00000437607 CRYMQ14894 314 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 MACC1Q6ZN28 852 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 NLRP9Q7RTR0 991 aa12.05□□□□□ -0.48
PTPRF-208ENST00000437607 B3GNT8Q7Z7M8 397 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms