RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 MTHFD2P13995 350 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 CASP2P42575 452 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 CHRNB3Q05901 458 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 ZNF33AQ06730 810 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 SMUG1Q53HV7 270 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 SYT6Q5T7P8 510 aaPredicted RBP10.61□□□□□ -0.71
USP54-204ENST00000422491 STEAP3Q658P3 488 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 PAGE2Q7Z2X7 111 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 SPATA19Q7Z5L4 167 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 HID1Q8IV36 788 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 EXT2Q93063 718 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 EMILIN2Q9BXX0 1053 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 DUSP16Q9BY84 665 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 ASPSCR1Q9BZE9 553 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 PRKD2Q9BZL6 878 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 BRINP2Q9C0B6 783 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 CEP44Q9C0F1 390 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 PLEKHA5Q9HAU0 1116 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 GLOD4Q9HC38 313 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 ENTPD7Q9NQZ7 604 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 EXD2Q9NVH0 621 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 EVLQ9UI08 416 aaPredicted RBP10.61□□□□□ -0.71
USP54-204ENST00000422491 PCDHGA10Q9Y5H3 936 aa10.61□□□□□ -0.71
USP54-204ENST00000422491 PEX10O60683 326 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 VPS4BO75351 444 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 ANXA6P08133 673 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 BMP1P13497 986 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SPNP16150 400 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 CXCR2P25025 360 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 IL12AP29459 219 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 RYKP34925 604 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 MAP2K4P45985 399 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 POLR2JP52435 117 aaKnown RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 CDK5R2Q13319 367 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SELPLGQ14242 412 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 NKG7Q16617 165 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 ZNF181Q2M3W8 571 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 VARS2Q5ST30 1063 aaKnown RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 CELF3Q5SZQ8 465 aaKnown RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP54-204ENST00000422491 KIAA0319Q5VV43 1072 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 C9orf57Q5W0N0 161 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 RANBP10Q6VN20 620 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 RNF19BQ6ZMZ0 732 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 AGMOQ6ZNB7 445 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 CILP2Q8IUL8 1156 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SVOPQ8N4V2 548 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 AGBL3Q8NEM8 1001 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 OR52K2Q8NGK3 314 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 CNIH3Q8TBE1 160 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 MCOLN3Q8TDD5 553 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 RBM4BQ9BQ04 359 aaKnown RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 RBM4Q9BWF3 364 aaKnown RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 ATXN3LQ9H3M9 355 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 DNAJB9Q9UBS3 223 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 DERAQ9Y315 318 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SPO11Q9Y5K1 396 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 ZNF236Q9UL36 1845 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SLC22A3O75751 556 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 NPPAP01160 153 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 CD1DP15813 335 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 GGT1P19440 569 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 MASP1P48740 699 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 COPZ1P61923 177 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 IGBP1P78318 339 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 FAM209AQ5JX71 171 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 GALNT7Q86SF2 657 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 DCP2Q8IU60 420 aaKnown RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 KIAA1958Q8N8K9 716 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 KCTD13Q8WZ19 329 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 REXO5Q96IC2 774 aaKnown RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 MRGPRX2Q96LB1 330 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 FAM49AQ9H0Q0 323 aaPredicted RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 AS3MTQ9HBK9 375 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SMPD4Q9NXE4 827 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 ERVK-18Q9QC07 812 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 OR12D3Q9UGF7 316 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 FBXO10Q9UK96 956 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 MIA3Q5JRA6 1907 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SYCE1LA8MT33 242 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 CENPBD1B2RD01 187 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 CLDN5O00501 218 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SLC16A6O15403 523 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 HOXC11O43248 304 aaPredicted RBP10.6□□□□□ -0.71
USP54-204ENST00000422491 SCO2O43819 266 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 PMPCBO75439 489 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 KATNA1O75449 491 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 VTNP04004 478 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SLC26A2P50443 739 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 GEMP55040 296 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 CLCA4Q14CN2 919 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 PFKFB4Q16877 469 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 NOMO2Q5JPE7 1267 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 TXNDC11Q6PKC3 985 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 DLEU7Q6UYE1 221 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 TAS2R42Q7RTR8 314 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 HEATR4Q86WZ0 1026 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 SVOPLQ8N434 492 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 DPP10Q8N608 796 aa10.6□□□□□ -0.71
USP54-204ENST00000422491 LINC01465Q8N7H1 131 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms