RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 UBL4BQ8N7F7 174 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 MIB2Q96AX9 1013 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 PSMG3-AS1Q96PY0 264 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 DONSONQ9NYP3 566 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 ANAPC2Q9UJX6 822 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 TMEM184BQ9Y519 407 aaPredicted RBP12.75□□□□□ -0.37
LINC00339-202ENST00000416769 SLC30A1Q9Y6M5 507 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 RPS6KL1Q9Y6S9 549 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 DDX3YO15523 660 aaKnown RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 KIF1CO43896 1103 aaKnown RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 ZRANB2O95218 330 aaKnown RBP eCLIP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 TNNT1P13805 278 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 TYRP1P17643 537 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 KDELR1P24390 212 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 IL4RP24394 825 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 MAP4P27816 1152 aaKnown RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 HSPA9P38646 679 aaKnown RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 SEPHS1P49903 392 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 ARSEP51690 589 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 RWDD2BP57060 319 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 ETF1P62495 437 aaKnown RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 ERV3-1Q14264 604 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 RPS6KA1Q15418 735 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 LACTB2Q53H82 288 aaPredicted RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 MARC1Q5VT66 337 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 WDR74Q6RFH5 385 aaPredicted RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 VSIG1Q86XK7 387 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 KATNAL2Q8IYT4 538 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 RCOR2Q8IZ40 523 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 TEX26Q8N6G2 289 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 KCTD6Q8NC69 237 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 GALNT6Q8NCL4 622 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 LPCAT1Q8NF37 534 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 ARRDC2Q8TBH0 407 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 APOBEC4Q8WW27 367 aaKnown RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 KIAA1143Q96AT1 154 aaPredicted RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 EID2BQ96D98 161 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 CATSPER2Q96P56 530 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 TLR10Q9BXR5 811 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 TDRD1Q9BXT4 1180 aaKnown RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 SARS2Q9NP81 518 aaKnown RBP12.74□□□□□ -0.37
LINC00339-202ENST00000416769 CROTQ9UKG9 612 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 TTLL3Q9Y4R7 772 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 KCNMB2Q9Y691 235 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 SHANK1Q9Y566 2161 aa12.74□□□□□ -0.37
LINC00339-202ENST00000416769 ZW10O43264 779 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 TIAF1O95411 115 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 HLA-DQB2P05538 268 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 TCN2P20062 427 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 DLSTP36957 453 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 ARL4AP40617 200 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 CDH6P55285 790 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 PPP1CAP62136 330 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 FOXM1Q08050 763 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 ABHD18Q0P651 414 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 LRP8Q14114 963 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 ZFYVE27Q5T4F4 411 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 ALS2CLQ60I27 953 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 CRTC3Q6UUV7 619 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 CEACAM20Q6UY09 585 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 ZNF765Q7L2R6 523 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 FAM26EQ8N5C1 309 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 LZTR1Q8N653 840 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 EXD1Q8NHP7 514 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 KRT35Q92764 455 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 PLEKHG4BQ96PX9 1271 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 TEFMQ96QE5 360 aaKnown RBP12.73□□□□□ -0.37
LINC00339-202ENST00000416769 ULBP3Q9BZM4 244 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 FBXO8Q9NRD0 319 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 RCOR3Q9P2K3 495 aaPredicted RBP12.73□□□□□ -0.37
LINC00339-202ENST00000416769 ATXN10Q9UBB4 475 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 SLC23A2Q9UGH3 650 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 PACSIN2Q9UNF0 486 aaPredicted RBP12.73□□□□□ -0.37
LINC00339-202ENST00000416769 SPTBP11277 2137 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 UNC79Q9P2D8 2635 aa12.73□□□□□ -0.37
LINC00339-202ENST00000416769 MN1Q10571 1320 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 CACNA1DQ01668 2161 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 A0A1W2PQ67 120 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 ZNF487B1APH4 448 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 KIF2AO00139 706 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 POLR1CO15160 346 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 MTX2O75431 263 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 PIRTP0C851 137 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 F3P13726 295 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 ZNF8P17098 575 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 GJC1P36383 396 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 COPS2P61201 443 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 UBE2IP63279 158 aaKnown RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 KRT81Q14533 505 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 SEPT7Q16181 437 aaKnown RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 QPCTQ16769 361 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 KHDC1Q4VXA5 237 aaKnown RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 ODF2Q5BJF6 829 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 HENMT1Q5T8I9 393 aaKnown RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 NCBP2-AS2Q69YL0 99 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 RAPGEF5Q92565 580 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 RSC1A1Q92681 617 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 RBM41Q96IZ5 413 aaKnown RBP12.72□□□□□ -0.37
LINC00339-202ENST00000416769 TGM7Q96PF1 710 aa12.72□□□□□ -0.37
LINC00339-202ENST00000416769 DPYSL5Q9BPU6 564 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms