RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 ADAM29Q9UKF5 820 aa2.58□□□□□ -2
MCF2-204ENST00000414978 AAR2Q9Y312 384 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 IL16Q14005 1332 aa2.58□□□□□ -2
MCF2-204ENST00000414978 ZAR1LA6NP61 321 aa2.58□□□□□ -2
MCF2-204ENST00000414978 PJA2O43164 708 aa2.58□□□□□ -2
MCF2-204ENST00000414978 ACSL3O95573 720 aa2.58□□□□□ -2
MCF2-204ENST00000414978 ADAP00813 363 aa2.58□□□□□ -2
MCF2-204ENST00000414978 IFNB1P01574 187 aa2.58□□□□□ -2
MCF2-204ENST00000414978 G6PDP11413 515 aa2.58□□□□□ -2
MCF2-204ENST00000414978 EEF2P13639 858 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 IGFBP6P24592 240 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 CAPZA1P52907 286 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CLDN2P57739 230 aa2.58□□□□□ -2
MCF2-204ENST00000414978 HHEXQ03014 270 aa2.58□□□□□ -2
MCF2-204ENST00000414978 BAATQ14032 418 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 TRIM29Q14134 588 aa2.58□□□□□ -2
MCF2-204ENST00000414978 GAGE13Q4V321 117 aa2.58□□□□□ -2
MCF2-204ENST00000414978 C9orf50Q5SZB4 431 aa2.58□□□□□ -2
MCF2-204ENST00000414978 B3GNTL1Q67FW5 361 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 HMBOX1Q6NT76 420 aa2.58□□□□□ -2
MCF2-204ENST00000414978 SLC27A1Q6PCB7 646 aa2.58□□□□□ -2
MCF2-204ENST00000414978 TEX38Q6PEX7 206 aa2.58□□□□□ -2
MCF2-204ENST00000414978 LCA5Q86VQ0 697 aa2.58□□□□□ -2
MCF2-204ENST00000414978 ZNF761Q86XN6 746 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 PALM2Q8IXS6 379 aa2.58□□□□□ -2
MCF2-204ENST00000414978 LINC00482Q8N8I6 264 aa2.58□□□□□ -2
MCF2-204ENST00000414978 OR8K5Q8NH50 307 aa2.58□□□□□ -2
MCF2-204ENST00000414978 EXOC6Q8TAG9 804 aa2.58□□□□□ -2
MCF2-204ENST00000414978 ZNF671Q8TAW3 534 aa2.58□□□□□ -2
MCF2-204ENST00000414978 BICD2Q8TD16 824 aa2.58□□□□□ -2
MCF2-204ENST00000414978 RNASE8Q8TDE3 154 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 PRPF31Q8WWY3 499 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 ARSGQ96EG1 525 aa2.58□□□□□ -2
MCF2-204ENST00000414978 EDEM2Q9BV94 578 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CACNG6Q9BXT2 260 aa2.58□□□□□ -2
MCF2-204ENST00000414978 DEF6Q9H4E7 631 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CDCP1Q9H5V8 836 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CNOT10Q9H9A5 744 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 TM9SF3Q9HD45 589 aa2.58□□□□□ -2
MCF2-204ENST00000414978 GCM1Q9NP62 436 aa2.58□□□□□ -2
MCF2-204ENST00000414978 KCNK9Q9NPC2 374 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CNIH4Q9P003 139 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CGNQ9P2M7 1197 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 RABL2AQ9UBK7 228 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 HAO1Q9UJM8 370 aa2.58□□□□□ -2
MCF2-204ENST00000414978 AGTPBP1Q9UPW5 1226 aa2.58□□□□□ -2
MCF2-204ENST00000414978 NOSIPQ9Y314 301 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 MICAL3Q7RTP6 2002 aa2.58□□□□□ -2
MCF2-204ENST00000414978 TRBC2A0A5B9 178 aa2.58□□□□□ -2
MCF2-204ENST00000414978 KCNU1A8MYU2 1149 aa2.58□□□□□ -2
MCF2-204ENST00000414978 DDX39AO00148 427 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 MSI1O43347 362 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 DCXO43602 365 aa2.58□□□□□ -2
MCF2-204ENST00000414978 ZNF821O75541 412 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 GCATO75600 419 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CFIP05156 583 aa2.58□□□□□ -2
MCF2-204ENST00000414978 DESP17661 470 aa2.58□□□□□ -2
MCF2-204ENST00000414978 RFC1P35251 1148 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 METAP2P50579 478 aaKnown RBP eCLIP2.58□□□□□ -2
MCF2-204ENST00000414978 ECT2LQ008S8 904 aa2.58□□□□□ -2
MCF2-204ENST00000414978 BEX3Q00994 111 aa2.58□□□□□ -2
MCF2-204ENST00000414978 LMAN2Q12907 356 aa2.58□□□□□ -2
MCF2-204ENST00000414978 NTRK2Q16620 822 aa2.58□□□□□ -2
MCF2-204ENST00000414978 SPDYE7PQ495Y7 208 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CCDC152Q4G0S7 254 aa2.58□□□□□ -2
MCF2-204ENST00000414978 GLE1Q53GS7 698 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 CXorf66Q5JRM2 361 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 LDLRAP1Q5SW96 308 aa2.58□□□□□ -2
MCF2-204ENST00000414978 NT5DC1Q5TFE4 455 aa2.58□□□□□ -2
MCF2-204ENST00000414978 GDF7Q7Z4P5 450 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CCDC105Q8IYK2 499 aa2.58□□□□□ -2
MCF2-204ENST00000414978 ZNF808Q8N4W9 903 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 SIRT6Q8N6T7 355 aa2.58□□□□□ -2
MCF2-204ENST00000414978 SETD9Q8NE22 299 aa2.58□□□□□ -2
MCF2-204ENST00000414978 DBF4BQ8NFT6 615 aa2.58□□□□□ -2
MCF2-204ENST00000414978 FAM110DQ8TAY7 271 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 SPATA20Q8TB22 786 aa2.58□□□□□ -2
MCF2-204ENST00000414978 ZCCHC10Q8TBK6 192 aa2.58□□□□□ -2
MCF2-204ENST00000414978 POC1BQ8TC44 478 aa2.58□□□□□ -2
MCF2-204ENST00000414978 POMGNT1Q8WZA1 660 aa2.58□□□□□ -2
MCF2-204ENST00000414978 LOXL4Q96JB6 756 aa2.58□□□□□ -2
MCF2-204ENST00000414978 C5orf34Q96MH7 638 aa2.58□□□□□ -2
MCF2-204ENST00000414978 MNTQ99583 582 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CADM1Q9BY67 442 aaKnown RBP2.58□□□□□ -2
MCF2-204ENST00000414978 TRIM2Q9C040 744 aa2.58□□□□□ -2
MCF2-204ENST00000414978 SLC5A7Q9GZV3 580 aa2.58□□□□□ -2
MCF2-204ENST00000414978 RWDD1Q9H446 243 aaPredicted RBP2.58□□□□□ -2
MCF2-204ENST00000414978 PAG1Q9NWQ8 432 aa2.58□□□□□ -2
MCF2-204ENST00000414978 OSGIN2Q9Y236 505 aa2.58□□□□□ -2
MCF2-204ENST00000414978 RAP2CQ9Y3L5 183 aa2.58□□□□□ -2
MCF2-204ENST00000414978 MAST3O60307 1309 aa2.58□□□□□ -2
MCF2-204ENST00000414978 FANCIQ9NVI1 1328 aa2.58□□□□□ -2
MCF2-204ENST00000414978 CUL9Q8IWT3 2517 aa2.58□□□□□ -2
MCF2-204ENST00000414978 FAM237AA0A1B0GTK4 181 aa2.57□□□□□ -2
MCF2-204ENST00000414978 PRR23AA6NEV1 266 aa2.57□□□□□ -2
MCF2-204ENST00000414978 C16orf96A6NNT2 1141 aa2.57□□□□□ -2
MCF2-204ENST00000414978 PPP6CO00743 305 aa2.57□□□□□ -2
MCF2-204ENST00000414978 YY2O15391 372 aa2.57□□□□□ -2
MCF2-204ENST00000414978 AVILO75366 819 aa2.57□□□□□ -2
MCF2-204ENST00000414978 BCAR3O75815 825 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms