RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 SCN1AP35498 2009 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 IGSF1Q8N6C5 1336 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ARHGAP21Q5T5U3 1957 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SHROOM4Q9ULL8 1493 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 LAMB1P07942 1786 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 IGLV4-69A0A075B6H9 119 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 IGKV3D-7A0A0C4DH55 119 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 IGKV3OR2-268A0A0C4DH90 116 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 CCDC66A2RUB6 948 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 OR2W5A6NFC9 320 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SDHAF1A6NFY7 115 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 TMEM88BA6NKF7 163 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ISM1B1AKI9 464 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 AP4M1O00189 453 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 PDPK1O15530 556 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 TGM5O43548 720 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 AHCYL1O43865 530 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 CCDC22O60826 627 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 TIMM17BO60830 172 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SOAT2O75908 522 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 PRKD3O94806 890 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 HAUS5O94927 633 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 HLA-DQA1P01909 254 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 HOXD4P09016 255 aaPredicted RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 CBR1P16152 277 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ZNF7P17097 686 aaPredicted RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 HSD3B2P26439 372 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 METAP2P50579 478 aaKnown RBP eCLIP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 DNA2P51530 1060 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 NUDT6P53370 316 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 GALCP54803 685 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 DEFA3P59666 94 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 DMTNQ08495 405 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SPAG11BQ08648 103 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SLAQ13239 276 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 CD226Q15762 336 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 CTU2Q2VPK5 515 aaKnown RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 TUBB8Q3ZCM7 444 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ABCA11PQ4W5N1 156 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 PDLIM3Q53GG5 364 aaPredicted RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ZNF766Q5HY98 468 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SFMBT2Q5VUG0 894 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 STYK1Q6J9G0 422 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 VHLLQ6RSH7 139 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 LINGO4Q6UY18 593 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 C17orf107Q6ZR85 190 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 Q6ZSV7 163 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SLC25A42Q86VD7 318 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 GCNT2Q8N0V5 402 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 AHI1Q8N157 1196 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 LINC01555Q8NAE3 123 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ST20-AS1Q8NBB2 130 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 UXS1Q8NBZ7 420 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 CATSPER1Q8NEC5 780 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 PLBD2Q8NHP8 589 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 FLVCR1-AS1Q8TAF5 88 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SLC22A8Q8TCC7 542 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 MRPS27Q92552 414 aaKnown RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 PIGKQ92643 395 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 GTF3AQ92664 365 aaKnown RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ZNF707Q96C28 371 aaPredicted RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 TRIM44Q96DX7 344 aaPredicted RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 CYFIP2Q96F07 1278 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ZC2HC1AQ96GY0 325 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ZNF496Q96IT1 587 aaPredicted RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 PGLYRP3Q96LB9 341 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 RNPC3Q96LT9 517 aaKnown RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ZSCAN31Q96LW9 406 aaPredicted RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 MAGEB18Q96M61 343 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 NECTIN4Q96NY8 510 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 GFM1Q96RP9 751 aaKnown RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ZNF607Q96SK3 696 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 CDC6Q99741 560 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 TBL1XR1Q9BZK7 514 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 GLT8D2Q9H1C3 349 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 SMOC2Q9H3U7 446 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 NXF3Q9H4D5 531 aaKnown RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 ANKZF1Q9H8Y5 726 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 MARCH7Q9H992 704 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 PIGVQ9NUD9 493 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 INTS10Q9NVR2 710 aaKnown RBP-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 TSPAN16Q9UKR8 245 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 PCDHA9Q9Y5H5 950 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 LIPGQ9Y5X9 500 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 WSB1Q9Y6I7 421 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 GTF3C1Q12789 2109 aa-1.61□□□□□ -2.67
RNU4-88P-201ENST00000411220 DYSFO75923 2080 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 IQSEC2Q5JU85 1478 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 ARHGAP23Q9P227 1491 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 ERBINQ96RT1 1412 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 SPEGQ15772 3267 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 LOC107984156A0A0G2JMH3 177 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 IQANK1A0A1B0GTG1 560 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 A0A1B0GTI1 187 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 HSFX4A0A1B0GTS1 333 aaPredicted RBP-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 HSFX3A0A1B0GWH4 333 aaPredicted RBP-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 A0A1W2PQU0 124 aa-1.62□□□□□ -2.67
RNU4-88P-201ENST00000411220 TCRBV7S2A1N4TA0A589 114 aa-1.62□□□□□ -2.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms