RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CYP4X1Q8N118 509 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 DNAJC19Q96DA6 116 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SPACA7Q96KW9 195 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 ABCC13Q9NSE7 274 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 PBRM1Q86U86 1689 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 HCN1O60741 890 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SCELO95171 688 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 COL6A2P12110 1019 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 GRK5P34947 590 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 EPHB3P54753 998 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 POTEHQ6S545 545 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 GPRC5AQ8NFJ5 357 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SMG7Q92540 1137 aaKnown RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 APOLD1Q96LR9 279 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 KCNH4Q9UQ05 1017 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 OR10H1Q9Y4A9 318 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 MAP4K5Q9Y4K4 846 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 PCDHB12Q9Y5F1 795 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 FKBP7Q9Y680 259 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 CKBP12277 381 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 LHCGRP22888 699 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 SERPINA4P29622 427 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 GCNT6Q5T4J0 391 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 BEND5Q7L4P6 421 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 FAM35AQ86V20 835 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 NAT16Q8N8M0 369 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 HJURPQ8NCD3 748 aaPredicted RBP11.75□□□□□ -0.53
SYNPO-202ENST00000394243 GMCL1P1Q8NEA9 526 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 OR2L5Q8NG80 312 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 KAZALD1Q96I82 304 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 AARSD1Q9BTE6 412 aaKnown RBP11.75□□□□□ -0.53
SYNPO-202ENST00000394243 TRIM2Q9C040 744 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 AMBNQ9NP70 447 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF639Q9UID6 485 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 OAZ3Q9UMX2 235 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CXCR6O00574 342 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 FBP2O00757 339 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ADAMDEC1O15204 470 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 OR10H2O60403 315 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 RAP2AP10114 183 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ECHS1P30084 290 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CHRNA5P30532 468 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 AFF1P51825 1210 aaKnown RBP11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CBLBQ13191 982 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 SEMA3AQ14563 771 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 TOMM20Q15388 145 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 TGFBIQ15582 683 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 OR2L3Q8NG85 312 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 RFKQ969G6 155 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ZDHHC6Q9H6R6 413 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 IFT46Q9NQC8 304 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CLTCL1P53675 1640 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 MCIDASD6RGH6 385 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CCNB2O95067 398 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CD40LGP29965 261 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 KLF1Q13351 362 aaPredicted RBP11.75□□□□□ -0.53
SYNPO-202ENST00000394243 NKD1Q969G9 470 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 GAL3ST1Q99999 423 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 POLE4Q9NR33 117 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 SALL4Q9UJQ4 1053 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 LRRC42Q9Y546 428 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 TCRBV5S4A2TA0A5A2 114 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 GTPBP1O00178 669 aaKnown RBP11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CDH1P12830 882 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 FSHRP23945 695 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 STOMP27105 288 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF248Q8NDW4 579 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 TMIEQ8NEW7 156 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 OR5K1Q8NHB7 308 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 STON2Q8WXE9 905 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 NSMCE3Q96MG7 304 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CLCC1Q96S66 551 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ELOVL4Q9GZR5 314 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ZNRF3Q9ULT6 936 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 C12orf71A8MTZ7 269 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ACKR2O00590 384 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 RPL9P32969 192 aaKnown RBP11.75□□□□□ -0.53
SYNPO-202ENST00000394243 ACSL1P33121 698 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 SNAPC2Q13487 334 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 GPR158Q5T848 1215 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 RAP1GAP2Q684P5 730 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 TDRPQ86YL5 185 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 RAET1EQ8TD07 263 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 CDADC1Q9BWV3 514 aa11.75□□□□□ -0.53
SYNPO-202ENST00000394243 GPN3Q9UHW5 284 aaPredicted RBP11.75□□□□□ -0.53
SYNPO-202ENST00000394243 MTA2O94776 668 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 IFNW1P05000 195 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 SLC26A2P50443 739 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TSPAN5P62079 268 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 SGCGQ13326 291 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 PLD1Q13393 1074 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 LY6KQ17RY6 165 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 UAP1L1Q3KQV9 507 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 FBXO48Q5FWF7 155 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 ANKRD46Q86W74 232 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 ATCAYQ86WG3 371 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 GPALPP1Q8IXQ4 340 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 DCBLD1Q8N8Z6 715 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 PDCD2LQ9BRP1 358 aa11.74□□□□□ -0.53
SYNPO-202ENST00000394243 TMPRSS4Q9NRS4 437 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms