RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 CRADDP78560 199 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 BASP1P80723 227 aaKnown RBP7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 B4GALNT1Q00973 533 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 NFATC2Q13469 925 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 BIRC2Q13490 618 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 GTF2H3Q13889 308 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 LRP8Q14114 963 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 SPIDRQ14159 915 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 ISXQ2M1V0 245 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 C3orf38Q5JPI3 329 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 DRICH1Q6PGQ1 229 aaPredicted RBP7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 FOXR1Q6PIV2 292 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 TMEM220Q6QAJ8 160 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 RBM44Q6ZP01 1051 aaKnown RBP7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 FAM83HQ6ZRV2 1179 aaPredicted RBP7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 C11orf96Q7Z7L8 435 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 LRRTM4Q86VH4 590 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 C17orf82Q86X59 251 aaPredicted RBP7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 RASGEF1CQ8N431 466 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 DDHD1Q8NEL9 900 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 CAPZA3Q96KX2 299 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 ZNF778Q96MU6 729 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 PPP1R2P1Q96PQ5 205 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 DEPDC7Q96QD5 511 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 GFM1Q96RP9 751 aaKnown RBP7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 LRRN3Q9H3W5 708 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 CCDC86Q9H6F5 360 aaKnown RBP7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 RMI1Q9H9A7 625 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 RDH14Q9HBH5 336 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 ARNT2Q9HBZ2 717 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 CRLS1Q9UJA2 301 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 SNX12Q9UMY4 172 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 RAXQ9Y2V3 346 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 ENTPD2Q9Y5L3 495 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 PTPRBP23467 1997 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 PLXNB3Q9ULL4 1909 aa7.56□□□□□ -1.2
HMGB3P1-201ENST00000393368 COL27A1Q8IZC6 1860 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 DMXL2Q8TDJ6 3036 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 ARID1BQ8NFD5 2236 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 MYLKQ15746 1914 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 CCDC162PA2VCL2 907 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 C2orf72A6NCS6 295 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 OR52A4PA6NMU1 304 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 PDZK1P1A8MUH7 402 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 D6RAR5 112 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 PGRMC1O00264 195 aaKnown RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 KMOO15229 486 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 PSMD3O43242 534 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 SGTAO43765 313 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 NUDT21O43809 227 aaKnown RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 VEGFDO43915 354 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 BRINP1O60477 761 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 POP7O75817 140 aaKnown RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 SUN1O94901 812 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 HGFP14210 728 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 ZNF7P17097 686 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 MSH3P20585 1137 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 ITGALP20701 1170 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 CSF2RBP32927 897 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 MAPK9P45984 424 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 PPM1FP49593 454 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 EMP3P54852 163 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 SESN2P58004 480 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 GNG11P61952 73 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 GABREP78334 506 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 CDH17Q12864 832 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 ITGA9Q13797 1035 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 NFE2L1Q14494 772 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 MAP9Q49MG5 647 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 ZRANB3Q5FWF4 1079 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 LDLRAP1Q5SW96 308 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 FNBP1LQ5T0N5 605 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 ANKRD22Q5VYY1 191 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 ZDHHC20Q5W0Z9 365 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 USP53Q70EK8 1073 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 ZNF534Q76KX8 674 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 TAS2R42Q7RTR8 314 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 PIANPQ8IYJ0 282 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 SFRP1Q8N474 314 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 LILRA3Q8N6C8 439 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 KDF1Q8NAX2 398 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 UBE2Q2Q8WVN8 375 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 MAIP1Q8WWC4 291 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 JPH3Q8WXH2 748 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 MAGOHBQ96A72 148 aaKnown RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 LRRC45Q96CN5 670 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 NXPE2Q96DL1 559 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 SGF29Q96ES7 293 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 PBKQ96KB5 322 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 TTC25Q96NG3 672 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 NUDT22Q9BRQ3 303 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 TBC1D10AQ9BXI6 508 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 SEMA6CQ9H3T2 930 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 EPB41L5Q9HCM4 733 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 CASS4Q9NQ75 786 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 NLE1Q9NVX2 485 aaPredicted RBP7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 SMOXQ9NWM0 555 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 TMEM9Q9P0T7 183 aa7.55□□□□□ -1.2
HMGB3P1-201ENST00000393368 FEZ2Q9UHY8 353 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms