RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MEI4A8MW99 385 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 PRAMEF26H0Y7S4 382 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 HNRNPCL1O60812 293 aaKnown RBP10.12□□□□□ -0.79
VPS53-202ENST00000389040 GJB3O75712 270 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 TM7SF2O76062 418 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 HAUS5O94927 633 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 EPN2O95208 641 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 CBX6O95503 412 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 PDHA1P08559 390 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 VIPR1P32241 457 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 ABL2P42684 1182 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 RACK1P63244 317 aaKnown RBP10.12□□□□□ -0.79
VPS53-202ENST00000389040 ARHGEF7Q14155 803 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 ZDHHC20Q5W0Z9 365 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 PRR23BQ6ZRT6 265 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 CYP2U1Q7Z449 544 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 CLEC14AQ86T13 490 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 ZC3HC1Q86WB0 502 aaKnown RBP10.12□□□□□ -0.79
VPS53-202ENST00000389040 ZSWIM9Q86XI8 627 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 C10orf107Q8IVU9 208 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 TMEFF1Q8IYR6 380 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 NRSN1Q8IZ57 195 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 RMDN1Q96DB5 314 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 HSPA12BQ96MM6 686 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 TMEM237Q96Q45 408 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 RAB3IPQ96QF0 476 aaPredicted RBP10.12□□□□□ -0.79
VPS53-202ENST00000389040 GPR22Q99680 433 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 SIKE1Q9BRV8 207 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 SLC17A9Q9BYT1 436 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 RHOJQ9H4E5 214 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 C6orf106Q9H6K1 298 aaPredicted RBP10.12□□□□□ -0.79
VPS53-202ENST00000389040 CAB39LQ9H9S4 337 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 FBXO6Q9NRD1 293 aaPredicted RBP10.12□□□□□ -0.79
VPS53-202ENST00000389040 MARCOQ9UEW3 520 aaPredicted RBP10.12□□□□□ -0.79
VPS53-202ENST00000389040 GMEB2Q9UKD1 530 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 PILRBQ9UKJ0 227 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 HS3ST3A1Q9Y663 406 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 BPTFQ12830 3046 aa10.12□□□□□ -0.79
VPS53-202ENST00000389040 A0A1W2PQU0 124 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 TTC24A2A3L6 582 aaPredicted RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 VAPBO95292 243 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ATP6V1G2O95670 118 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 SERPINE1P05121 402 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 IGHV4-34P06331 123 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 C2P06681 752 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 PYGLP06737 847 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ELFN1P0C7U0 828 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 KITP10721 976 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 PAMP19021 973 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 HNRNPA2B1P22626 353 aaKnown RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 GRK2P25098 689 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 GMPRP36959 345 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 CHRNA4P43681 627 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ARCN1P48444 511 aaKnown RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 SLC1A6P48664 564 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 DHPSP49366 369 aaPredicted RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 AQP5P55064 265 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 NHLH1Q02575 133 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 RIPK1Q13546 671 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 IHHQ14623 411 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 PCSK7Q16549 785 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ZNF284Q2VY69 593 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ESRP1Q6NXG1 681 aaKnown RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 LIPIQ6XZB0 460 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 KDELC2Q7Z4H8 507 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 DCP2Q8IU60 420 aaKnown RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 SLC41A1Q8IVJ1 513 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 PLD6Q8N2A8 252 aaKnown RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 FRMD1Q8N878 549 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ACVR1CQ8NER5 493 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 DTX3LQ8TDB6 740 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 SLC7A6OSQ96CW6 309 aaPredicted RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 TUBB6Q9BUF5 446 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ZDHHC5Q9C0B5 715 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 WWP1Q9H0M0 922 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 CD93Q9NPY3 652 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 TREX1Q9NSU2 369 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ZNF358Q9NW07 568 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 LNPEPQ9UIQ6 1025 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 SLC39A10Q9ULF5 831 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 INVSQ9Y283 1065 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 MYLKQ15746 1914 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 A0A1B0GTW7 788 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 AHSGP02765 367 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 RALBP11234 206 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 CPA3P15088 417 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 ARNTP27540 789 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 TEAD1P28347 426 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 AKT2P31751 481 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 HNF1BP35680 557 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 CSRP3P50461 194 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 AFF3P51826 1226 aaKnown RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 IRF9Q00978 393 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 DPTQ07507 201 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 SRSF5Q13243 272 aaKnown RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 SEPT6Q14141 434 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 TEAD4Q15561 434 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 DUOXA1Q1HG43 343 aa10.11□□□□□ -0.79
VPS53-202ENST00000389040 KIAA0930Q6ICG6 404 aaPredicted RBP10.11□□□□□ -0.79
VPS53-202ENST00000389040 ZNF765Q7L2R6 523 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms