RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 H3BMM5 538 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 SLC25A14O95258 325 aaPredicted RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 CPA3P15088 417 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 MSH3P20585 1137 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 ALDH3A1P30838 453 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 SLC26A3P40879 764 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 CLCN7P51798 805 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 KPNA2P52292 529 aaKnown RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 ZBTB16Q05516 673 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 PCLAFQ15004 111 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 SIX5Q8N196 739 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 DDHD1Q8NEL9 900 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 HMGB4Q8WW32 186 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 VPS35Q96QK1 796 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 CD93Q9NPY3 652 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 MBD1Q9UIS9 605 aaPredicted RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 NCKAP1Q9Y2A7 1128 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 BIRC5O15392 142 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 PLRG1O43660 514 aaKnown RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 SOD1P00441 154 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 APOA4P06727 396 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 ATP1B2P14415 290 aaPredicted RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 CD9P21926 228 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 SKIV2L2P42285 1042 aaKnown RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 UGT3A1Q6NUS8 523 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 C10orf107Q8IVU9 208 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 TMEM151AQ8N4L1 468 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 SGF29Q96ES7 293 aa26.51■■□□□ 1.83
MSX1-201ENST00000382723 ZKSCAN7Q9P0L1 754 aaPredicted RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 ZFR2Q9UPR6 939 aaKnown RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 MRPS17Q9Y2R5 130 aaKnown RBP26.51■■□□□ 1.83
MSX1-201ENST00000382723 CFAP99D6REC4 459 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 G3V2L1 256 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 GABRG2P18507 467 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 ADPRHP54922 357 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 DPTQ07507 201 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 LRRC32Q14392 662 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 FAM47EQ6ZV65 393 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 KLK6Q92876 244 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 FAM131CQ96AQ9 280 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 FOXQ1Q9C009 403 aa26.5■■□□□ 1.83
MSX1-201ENST00000382723 ZBTB14O43829 449 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 SBK3P0C264 359 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 RALBP11234 206 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 CD1DP15813 335 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TFEBP19484 476 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 ACAP2Q15057 778 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 CHI3L2Q15782 390 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 LDLRAP1Q5SW96 308 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 NAPRTQ6XQN6 538 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 PHYKPLQ8IUZ5 450 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 CPNE9Q8IYJ1 553 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 SHDQ96IW2 340 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 MRPL57Q9BQC6 102 aaKnown RBP26.49■■□□□ 1.83
MSX1-201ENST00000382723 MRPL46Q9H2W6 279 aaKnown RBP26.49■■□□□ 1.83
MSX1-201ENST00000382723 ALG9Q9H6U8 611 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 LTB4R2Q9NPC1 389 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 SIRPGQ9P1W8 387 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TSR3Q9UJK0 312 aaKnown RBP26.49■■□□□ 1.83
MSX1-201ENST00000382723 DHRS7Q9Y394 339 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3DA0A087WVF3 549 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3IA0A087WXS9 549 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3EA0A087X179 549 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3KA0A087X1G2 549 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3FA6NER0 549 aaPredicted RBP26.49■■□□□ 1.83
MSX1-201ENST00000382723 C19orf67A6NJJ6 358 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 SRRM3A6NNA2 597 aaPredicted RBP26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3LB9A6J9 549 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 OR56A5P0C7T3 313 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3HP0C7X1 549 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3GQ6DHY5 549 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3CQ6IPX1 549 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TRIM74Q86UV6 250 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 TBC1D3Q8IZP1 549 aaPredicted RBP26.49■■□□□ 1.83
MSX1-201ENST00000382723 PGBD3Q8N328 593 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 PLA2G15Q8NCC3 412 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 BCAS4Q8TDM0 211 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 EEF1AKMT1Q8WVE0 214 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 FGFR1OP2Q9NVK5 253 aa26.49■■□□□ 1.83
MSX1-201ENST00000382723 CNOT6Q9ULM6 557 aaKnown RBP26.49■■□□□ 1.83
MSX1-201ENST00000382723 PLXNB3Q9ULL4 1909 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 COL6A3P12111 3177 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 KANSL1LA0AUZ9 987 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 FAM170BA6NMN3 283 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 PCCBP05166 539 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 MYL2P10916 166 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 IL2P60568 153 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 RPS21P63220 83 aaKnown RBP26.48■■□□□ 1.83
MSX1-201ENST00000382723 TECRLQ5HYJ1 363 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 RGS9BPQ6ZS82 235 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 ZCCHC23Q6ZST2 131 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 USP30Q70CQ3 517 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 CPLX4Q7Z7G2 160 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 NKAPQ8N5F7 415 aaKnown RBP26.48■■□□□ 1.83
MSX1-201ENST00000382723 PPP1R14CQ8TAE6 165 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 LINGO1Q96FE5 620 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 CCT8L2Q96SF2 557 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 POLMQ9NP87 494 aaPredicted RBP26.48■■□□□ 1.83
MSX1-201ENST00000382723 SLCO1B3Q9NPD5 702 aa26.48■■□□□ 1.83
MSX1-201ENST00000382723 FZD4Q9ULV1 537 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms