RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 UNCXA6NJT0 531 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 NPHS1O60500 1241 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 TSPAN1O60635 241 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 TMEM63AO94886 807 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 SCELO95171 688 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 CLDN9O95484 217 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 MT-CYBP00156 380 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 MT-ND1P03886 318 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 ASLP04424 464 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 ASGR1P07306 291 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 PRKAR1AP10644 381 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 PRKAR2AP13861 404 aaKnown RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 CYP3A5P20815 502 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 HTR1BP28222 390 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 IDH3AP50213 366 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 RGS1Q08116 209 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 ELP6Q0PNE2 266 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 CYP4X1Q8N118 509 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 C11orf65Q8NCR3 313 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 OR4A15Q8NGL6 344 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 RSPH9Q9H1X1 276 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 SGK2Q9HBY8 427 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 TRIM39Q9HCM9 518 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 NUDT4Q9NZJ9 180 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 PDP1Q9P0J1 537 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 IGSF9Q9P2J2 1179 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 MBD2Q9UBB5 411 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 SEC14L3Q9UDX4 400 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 H3BM21 787 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 SSNA1O43805 119 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 TACR2P21452 398 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 PSMA1P25786 263 aaKnown RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 TAF13Q15543 124 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 DLK2Q6UY11 383 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 FAM92BQ6ZTR7 304 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 CHPFQ8IZ52 775 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 UBR7Q8N806 425 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 PHC3Q8NDX5 983 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 FLCNQ8NFG4 579 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 SLCO2A1Q92959 643 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 EMID1Q96A84 441 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 ACBD6Q9BR61 282 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 MAGEH1Q9H213 219 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 PLK2Q9NYY3 685 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 WBP11Q9Y2W2 641 aaKnown RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 ZNF780BQ9Y6R6 833 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 TULP3O75386 442 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 MMP3P08254 477 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 NMBRP28336 390 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 CDH5P33151 784 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 RPIAP49247 311 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 DAOAP59103 153 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 BNC1Q01954 994 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 GNA12Q03113 381 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 SLC10A6Q3KNW5 377 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 RALGPS1Q5JS13 557 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 C9orf64Q5T6V5 341 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 NAT14Q8WUY8 206 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 TRPS1Q9UHF7 1281 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 PCDHA2Q9Y5H9 948 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 TFECO14948 347 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 UGT2B4P06133 528 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 OR4Q2P0C623 313 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 HSPA7P48741 367 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 ACLYP53396 1101 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 RAB25P57735 213 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 CACNG1Q06432 222 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 SLC24A5Q71RS6 500 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 RAVER1Q8IY67 606 aaKnown RBP11.34□□□□□ -0.59
PTPRF-203ENST00000372407 KLHL23Q8NBE8 558 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 XAGE5Q8WWM1 108 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 AIF1LQ9BQI0 150 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 NMUR1Q9HB89 426 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 GALNT8Q9NY28 637 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 IRAK3Q9Y616 596 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 WASF2Q9Y6W5 498 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 IGKV6D-41A0A0C4DH26 115 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 FAM240BA0A1B0GVZ2 78 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 CASKO14936 926 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 ACSL4O60488 711 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 SPAM1P38567 509 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 GDF10P55107 478 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 NAE1Q13564 534 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 ACSBG2Q5FVE4 666 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 IRAK1BP1Q5VVH5 260 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 KIAA0930Q6ICG6 404 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 GALNT5Q7Z7M9 940 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 TAC4Q86UU9 113 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 DENND6AQ8IWF6 608 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 CMASQ8NFW8 434 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 RERGQ96A58 199 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 NODALQ96S42 347 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 HECAQ9UBI9 543 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 GPSM3Q9Y4H4 160 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 UGT2B17O75795 530 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 METTL18O95568 372 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 FADS2O95864 444 aaKnown RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 DHFRP00374 187 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 HNMTP50135 292 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms