RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 PDCD5O14737 125 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TNFRSF10BO14763 440 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TLX3O43711 291 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 C8BP07358 591 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 YBX3P16989 372 aaKnown RBP eCLIP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 GSTM3P21266 225 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 FXR2P51116 673 aaKnown RBP eCLIP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 PUM1Q14671 1186 aaKnown RBP eCLIP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 PRKD1Q15139 912 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 BEND6Q5SZJ8 279 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 LYSMD4Q5XG99 296 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 MTFR2Q6P444 385 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 MARK2Q7KZI7 788 aaKnown RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 EIF3MQ7L2H7 374 aaKnown RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 GPR65Q8IYL9 337 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 SLC44A3Q8N4M1 653 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 OR14C36Q8NHC7 312 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 KCNN1Q92952 543 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 VPS35Q96QK1 796 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TXN2Q99757 166 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF717Q9BY31 904 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 UNKQ9C0B0 810 aaKnown RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TIGARQ9NQ88 270 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 CLN6Q9NWW5 311 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 GTSE1Q9NYZ3 720 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 ADAMTS1Q9UHI8 967 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 SSR3Q9UNL2 185 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 AGAP1Q9UPQ3 857 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 ERVK-11Q9UQG0 969 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 CLCA1A8K7I4 914 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 MYO1GB0I1T2 1018 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 H0YGN5 161 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 LYPLA1O75608 230 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 APBB3O95704 486 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 NR3C1P04150 777 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 DRD1P21728 446 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 OC90Q02509 493 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 BIKQ13323 160 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 SPANXN3Q5MJ09 141 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 IDNKQ5T6J7 187 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF618Q5T7W0 954 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 HFE2Q6ZVN8 426 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 CHST15Q7LFX5 561 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 LRRC34Q8IZ02 419 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 SMYD1Q8NB12 490 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 OR10G6Q8NH81 332 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 LMX1AQ8TE12 382 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 IPCEF1Q8WWN9 437 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 NXPE2Q96DL1 559 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 CLIP3Q96DZ5 547 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 PBDC1Q9BVG4 233 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 RAB11FIP5Q9BXF6 653 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 CLPBQ9H078 707 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 NOD2Q9HC29 1040 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 COPS7AQ9UBW8 275 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 DCTN4Q9UJW0 460 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 NEU2Q9Y3R4 380 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 H7C2Y5 167 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 PECAM1P16284 738 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 EIF4BP23588 611 aaKnown RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 GNA15P30679 374 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 FEN1P39748 380 aaKnown RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 GJA8P48165 433 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 IST1P53990 364 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TAS2R31P59538 309 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TPI1P60174 286 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 SMAD3P84022 425 aaKnown RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 GRTP1Q5TC63 336 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TSHZ1Q6ZSZ6 1077 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 RALGPS2Q86X27 583 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 LIX1LQ8IVB5 337 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 MEIOBQ8N635 442 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 OR56A4Q8NGH8 313 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 OR4C15Q8NGM1 316 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 STAG3L4Q8TBR4 150 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 STON2Q8WXE9 905 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 MOAP1Q96BY2 351 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF347Q96SE7 839 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 POTEKPQ9BYX7 375 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 SEMA3GQ9NS98 782 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 BARHL2Q9NY43 387 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 NYAP2Q9P242 653 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 DUSP12Q9UNI6 340 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 GPC6Q9Y625 555 aaPredicted RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 SIP14410 1827 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 ARID1AO14497 2285 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 CASTOR2A6NHX0 329 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 DUXAA6NLW8 204 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 DDX3XO00571 662 aaKnown RBP eCLIP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 LRRTM2O43300 516 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 PMPCBO75439 489 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 ARL6IP5O75915 188 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 MT-ND2P03891 347 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 NUDT17P0C025 328 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 RPL9P32969 192 aaKnown RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TTPAP49638 278 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 CDK9P50750 372 aaKnown RBP3.26□□□□□ -1.89
CSMD3-202ENST00000339701 IRAK1P51617 712 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 MIIPQ5JXC2 388 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms