RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PRSS38A1L453 326 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 GPR89AB7ZAQ6 455 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 CFAP99D6REC4 459 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 KHNYNO15037 678 aaKnown RBP21.9■■□□□ 1.1
SDC3-202ENST00000339394 RIPK2O43353 540 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 DNAJC6O75061 913 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 NDUFS3O75489 264 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 S1PR4O95977 384 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 GPR89BP0CG08 455 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 ATP1B2P14415 290 aaPredicted RBP21.9■■□□□ 1.1
SDC3-202ENST00000339394 NHLH1Q02575 133 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 KBTBD12Q3ZCT8 623 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 ZNF789Q5FWF6 425 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 TCEAL6Q6IPX3 200 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 PACS1Q6VY07 963 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 DET1Q7L5Y6 550 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 RBFAQ8N0V3 343 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 CLDN19Q8N6F1 224 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 SCG3Q8WXD2 468 aaKnown RBP21.9■■□□□ 1.1
SDC3-202ENST00000339394 TCEAL3Q969E4 200 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 SGF29Q96ES7 293 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 PHOX2BQ99453 314 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 NUSAP1Q9BXS6 441 aaKnown RBP21.9■■□□□ 1.1
SDC3-202ENST00000339394 CAAP1Q9H8G2 361 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 ERVMER34-1Q9H9K5 563 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 CYP4F12Q9HCS2 524 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 DNAJC28Q9NX36 388 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 SUFUQ9UMX1 484 aa21.9■■□□□ 1.1
SDC3-202ENST00000339394 FAM159BA6NKW6 160 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 CXorf49A8MYA2 514 aaPredicted RBP21.89■■□□□ 1.09
SDC3-202ENST00000339394 ARHGAP33O14559 1287 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 CHUKO15111 745 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 PFDN6O15212 129 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 ZNF7P17097 686 aaPredicted RBP21.89■■□□□ 1.09
SDC3-202ENST00000339394 CTSCP53634 463 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 MPP1Q00013 466 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 PPARDQ03181 441 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 RNF187Q5TA31 235 aaPredicted RBP21.89■■□□□ 1.09
SDC3-202ENST00000339394 KIAA0408Q6ZU52 694 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 RD3Q7Z3Z2 195 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 HID1Q8IV36 788 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 LPGAT1Q92604 370 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 CDKL2Q92772 493 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 FUT8Q9BYC5 575 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 FBXO6Q9NRD1 293 aaPredicted RBP21.89■■□□□ 1.09
SDC3-202ENST00000339394 INTS10Q9NVR2 710 aaKnown RBP21.89■■□□□ 1.09
SDC3-202ENST00000339394 NCDNQ9UBB6 729 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 RABGEF1Q9UJ41 708 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 PRKAB1Q9Y478 270 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 DGKBQ9Y6T7 804 aa21.89■■□□□ 1.09
SDC3-202ENST00000339394 OR2AG2A6NM03 316 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 SGTAO43765 313 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 HAUS5O94927 633 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 CSF2P04141 144 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 IVLP07476 585 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 ZNF806P0C7X5 589 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 LEPRP48357 1165 aaKnown RBP21.88■■□□□ 1.09
SDC3-202ENST00000339394 HK3P52790 923 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 GTF2H3Q13889 308 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 ZNF547Q8IVP9 402 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 CAVIN3Q969G5 261 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 EPB41L4BQ9H329 900 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 RMI1Q9H9A7 625 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 CARS2Q9HA77 564 aaKnown RBP21.88■■□□□ 1.09
SDC3-202ENST00000339394 ZNHIT2Q9UHR6 403 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 VPS9D1Q9Y2B5 631 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 CRYL1Q9Y2S2 319 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 PRSS21Q9Y6M0 314 aa21.88■■□□□ 1.09
SDC3-202ENST00000339394 UBA6A0AVT1 1052 aaPredicted RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 PRMT5O14744 637 aaPredicted RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 GRID2O43424 1007 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 AHSGP02765 367 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 SYPP08247 313 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 GABRB3P28472 473 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 GNPDA1P46926 289 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 SPEM2Q0P670 501 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 SLC29A2Q14542 456 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 HLA-BQ31612 363 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 PYCR3Q53H96 274 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 TMEM220Q6QAJ8 160 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 TRAPPC5Q8IUR0 188 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 CTAGE3PQ8IX95 158 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 UHMK1Q8TAS1 419 aaKnown RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 ELF4Q99607 663 aaPredicted RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 ZDHHC5Q9C0B5 715 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 CLPBQ9H078 707 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 P2RY12Q9H244 342 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 TCEAL2Q9H3H9 227 aaPredicted RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 GPR34Q9UPC5 381 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 PSAT1Q9Y617 370 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 SCAMP1O15126 338 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 RASGRP1O95267 797 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 TNFP01375 233 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 NME1P15531 152 aaKnown RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 JUNDP17535 347 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 BLKP51451 505 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 ADARP55265 1226 aaKnown RBP21.87■■□□□ 1.09
SDC3-202ENST00000339394 IL27RAQ6UWB1 636 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 GALNT7Q86SF2 657 aa21.87■■□□□ 1.09
SDC3-202ENST00000339394 SLC26A11Q86WA9 606 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms