RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 OR2AG2A6NM03 316 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 KMOO15229 486 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 SEC31AO94979 1220 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 FTH1P19P0C7X4 201 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 RALBP11234 206 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 CKMT2P17540 419 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 ACRV1P26436 265 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 FOXN2P32314 431 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 MAGEA3P43357 314 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 RPL21P46778 160 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 CTSCP53634 463 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 ITGA8P53708 1063 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 TUBB2AQ13885 445 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 MORF4L2Q15014 288 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 INSCQ1MX18 579 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 ZNF547Q8IVP9 402 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 SLC35F3Q8IY50 421 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 PIANPQ8IYJ0 282 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 OR4L1Q8NH43 312 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 NAT14Q8WUY8 206 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 MFSD3Q96ES6 412 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 CCDC97Q96F63 343 aaPredicted RBP15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 TUBB2BQ9BVA1 445 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 DPH5Q9H2P9 285 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 TREX1Q9NSU2 369 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 SPATS2LQ9NUQ6 558 aaKnown RBP15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 EVA1BQ9NVM1 165 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 ZDHHC3Q9NYG2 299 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 NCKIPSDQ9NZQ3 722 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 SNX24Q9Y343 169 aa15.68■□□□□ 0.1
CCDC28A-201ENST00000332797 LY6G6EA0A0G2JKS1 128 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 CFAP99D6REC4 459 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 CKMT1AP12532 417 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 ZNF7P17097 686 aaPredicted RBP15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 RPIAP49247 311 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 B4GALNT1Q00973 533 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 NR0B2Q15466 257 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 DBN1Q16643 649 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 FASTKD1Q53R41 847 aaKnown RBP15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 FNBP1LQ5T0N5 605 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 HIBCHQ6NVY1 386 aaPredicted RBP15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 TMEM220Q6QAJ8 160 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 SLCO6A1Q86UG4 719 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 SFTPA2Q8IWL1 248 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 ARL10Q8N8L6 244 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 ZDHHC1Q8WTX9 485 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 TRIM56Q9BRZ2 755 aaKnown RBP15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 ERP44Q9BS26 406 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 OSGEPL1Q9H4B0 414 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 KLC4Q9NSK0 619 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 TOR4AQ9NXH8 423 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 ANAPC5Q9UJX4 755 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 APOBEC2Q9Y235 224 aaKnown RBP15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 DNAJC16Q9Y2G8 782 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 MAD1L1Q9Y6D9 718 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 U3KQA8 63 aa15.67■□□□□ 0.1
CCDC28A-201ENST00000332797 BANF1O75531 89 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 PBLDP30039 288 aaPredicted RBP15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 ACADVLP49748 655 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 DUSP3P51452 185 aaPredicted RBP15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 SMAD1Q15797 465 aaKnown RBP15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 DNAJC21Q5F1R6 531 aaKnown RBP15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 N4BP2L1Q5TBK1 243 aaPredicted RBP15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 ARMC3Q5W041 872 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 AGGF1Q8N302 714 aaeCLIP15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 PNPLA1Q8N8W4 532 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 MNS1Q8NEH6 495 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 HEXDCQ8WVB3 486 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 ZNF669Q96BR6 464 aaPredicted RBP15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 SGF29Q96ES7 293 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 SIGLEC10Q96LC7 697 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 TIMM29Q9BSF4 260 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 CATSPERZQ9NTU4 200 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 SLC23A2Q9UGH3 650 aa15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 ARID1BQ8NFD5 2236 aaPredicted RBP15.66■□□□□ 0.1
CCDC28A-201ENST00000332797 FAM237BA0A1B0GVD1 139 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 MAGEB16A2A368 324 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 CPED1A4D0V7 1026 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 SMAPO00193 183 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 NDC80O14777 642 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 NOBOXO60393 691 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 SNX2O60749 519 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 RFPL3O75679 317 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 VAPBO95292 243 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 ATP1B2P14415 290 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 PAMP19021 973 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 ACP1P24666 158 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 DHX9Q08211 1270 aaKnown RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 BBS9Q3SYG4 887 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 C8orf74Q6P047 294 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 GUSBP11Q6P575 273 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 C11orf96Q7Z7L8 435 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 OTUD6BQ8N6M0 293 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 BEND7Q8N7W2 519 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 STAMBPL1Q96FJ0 436 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 ZNF514Q96K75 400 aaPredicted RBP15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 PWWP2AQ96N64 755 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 RAB17Q9H0T7 212 aa15.65■□□□□ 0.1
CCDC28A-201ENST00000332797 PADI4Q9UM07 663 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms