RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 KRT80Q6KB66 452 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 ZCCHC23Q6ZST2 131 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 DSELQ8IZU8 1212 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 WDR48Q8TAF3 677 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 CDKN2AIPNLQ96HQ2 116 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 EXO5Q9H790 373 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 CSNK1G1Q9HCP0 422 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 COQ6Q9Y2Z9 468 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 COL4A1P02462 1669 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 IQCF5A8MTL0 148 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 MYO1GB0I1T2 1018 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 ERAL1O75616 437 aaKnown RBP9.18□□□□□ -0.94
PTPRE-202ENST00000306042 RECQL5O94762 991 aaPredicted RBP9.18□□□□□ -0.94
PTPRE-202ENST00000306042 FYNP06241 537 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 CSTF2P33240 577 aaKnown RBP eCLIP9.18□□□□□ -0.94
PTPRE-202ENST00000306042 CLCN4P51793 760 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 IFI35P80217 286 aaPredicted RBP9.18□□□□□ -0.94
PTPRE-202ENST00000306042 PDE1CQ14123 709 aaPredicted RBP9.18□□□□□ -0.94
PTPRE-202ENST00000306042 DNAL1Q4LDG9 190 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 PIWIL4Q7Z3Z4 852 aaKnown RBP9.18□□□□□ -0.94
PTPRE-202ENST00000306042 FAM129CQ86XR2 697 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 WDR92Q96MX6 357 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 GBP5Q96PP8 586 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 PCBD2Q9H0N5 130 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 PCDH12Q9NPG4 1184 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 MAPRE3Q9UPY8 281 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 KCNK6Q9Y257 313 aa9.18□□□□□ -0.94
PTPRE-202ENST00000306042 ABLIM3O94929 683 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 PGLSO95336 258 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 IFNA14P01570 189 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 TCN1P20061 433 aaPredicted RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 SCAPQ12770 1279 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 ZBTB17Q13105 803 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 NFATC2Q13469 925 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 RASA2Q15283 850 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 MINDY4Q4G0A6 757 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 AGKQ53H12 422 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 TJAP1Q5JTD0 557 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 RNASEH2BQ5TBB1 312 aaKnown RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 SLC9B2Q86UD5 537 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 NPAS3Q8IXF0 933 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CPXM2Q8N436 756 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 ZMIZ2Q8NF64 920 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 HIC2Q96JB3 615 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CCT8L2Q96SF2 557 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 RC3H2Q9HBD1 1191 aaKnown RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 TMEM98Q9Y2Y6 226 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 OR10H1Q9Y4A9 318 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 MFHAS1Q9Y4C4 1052 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 GRID2O43424 1007 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CYP17A1P05093 508 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 C2P06681 752 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 C8GP07360 202 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 THRAP10827 490 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 LSP1P33241 339 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 S100A3P33764 101 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 GJA4P35212 333 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 SUOXP51687 545 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CACNA2D1P54289 1103 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CYLC2Q14093 348 aaPredicted RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 MLF2Q15773 248 aaPredicted RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CCSAPQ6IQ19 270 aaPredicted RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 TTC27Q6P3X3 843 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 OXR1Q8N573 874 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CCM2Q9BSQ5 444 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 AARSD1Q9BTE6 412 aaKnown RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 TTLL2Q9BWV7 592 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 ZNF556Q9HAH1 456 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 POLD2P49005 469 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 NUDT2P50583 147 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 ZNF844Q08AG5 666 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 GNA13Q14344 377 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 RGS9BPQ6ZS82 235 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 DENND1AQ8TEH3 1009 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 LINC01599Q8WXQ3 324 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 TSGA13Q96PP4 275 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 RNF38Q9H0F5 515 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 EFCAB1Q9HAE3 211 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 SGK2Q9HBY8 427 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 ZNF487B1APH4 448 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 ATP1B2P14415 290 aaPredicted RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 EEF1B2P24534 225 aaKnown RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 HNF1BP35680 557 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 NUDT1P36639 197 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 COPAP53621 1224 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 PRKAG1P54619 331 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 ZNF234Q14588 700 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 KCTD19Q17RG1 926 aaPredicted RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CPNE9Q8IYJ1 553 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 GJD3Q8N144 294 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 LRRC4CQ9HCJ2 640 aa9.17□□□□□ -0.94
PTPRE-202ENST00000306042 CDV3Q9UKY7 258 aaKnown RBP9.17□□□□□ -0.94
PTPRE-202ENST00000306042 B2RBV5 119 aa9.16□□□□□ -0.94
PTPRE-202ENST00000306042 K7ERQ8 282 aa9.16□□□□□ -0.94
PTPRE-202ENST00000306042 PI15O43692 258 aa9.16□□□□□ -0.94
PTPRE-202ENST00000306042 EPOP01588 193 aa9.16□□□□□ -0.94
PTPRE-202ENST00000306042 RPL10P27635 214 aaKnown RBP9.16□□□□□ -0.94
PTPRE-202ENST00000306042 RPL3P39023 403 aaKnown RBP9.16□□□□□ -0.94
PTPRE-202ENST00000306042 STX4Q12846 297 aa9.16□□□□□ -0.94
PTPRE-202ENST00000306042 SIM2Q14190 667 aaPredicted RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms