RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TGFBIQ15582 683 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 TMEM53Q6P2H8 277 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 UBE2J2Q8N2K1 259 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 TMIGD2Q96BF3 282 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 VPS35Q96QK1 796 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 SEMA3CQ99985 751 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 TLE6Q9H808 572 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 VRTNQ9H8Y1 702 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 TRPV5Q9NQA5 729 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 SH3BP1Q9Y3L3 701 aa15.25■□□□□ 0.03
SHH-201ENST00000297261 FARP1Q9Y4F1 1045 aaPredicted RBP15.25■□□□□ 0.03
SHH-201ENST00000297261 A0A1B0GW55 424 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 KRT87PA6NCN2 255 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 AIREO43918 545 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 DUX4L2P0CJ85 424 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 DUX4L3P0CJ86 424 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 DUX4L4P0CJ87 422 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 DUX4L5P0CJ88 424 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 DUX4L6P0CJ89 424 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 DUX4L7P0CJ90 424 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 CDH5P33151 784 aaPredicted RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 SLC11A2P49281 568 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 TUBA4AP68366 448 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 CEACAM7Q14002 265 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 SYT16Q17RD7 645 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 PYDC2Q56P42 97 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 INTS6LQ5JSJ4 861 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 TMEM110Q86TL2 294 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 SYT12Q8IV01 421 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 PLD6Q8N2A8 252 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 NACC2Q96BF6 587 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 YME1L1Q96TA2 773 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 RBM4BQ9BQ04 359 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 RBM4Q9BWF3 364 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 SERHL2Q9H4I8 314 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 SERHLQ9NQF3 203 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 TBCCD1Q9NVR7 557 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 DUX4Q9UBX2 424 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 CYTH4Q9UIA0 394 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 SNTNA6NMZ2 147 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 IFNA14P01570 189 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 AQP1P29972 269 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 INTS11Q5TA45 600 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 PLET1Q6UQ28 207 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 OSTM1Q86WC4 334 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 NKAPQ8N5F7 415 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 TOR3AQ9H497 397 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 GLOD4Q9HC38 313 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 WDR70Q9NW82 654 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 TOR4AQ9NXH8 423 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 TLL2Q9Y6L7 1015 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 TNS1Q9HBL0 1735 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 STAU1O95793 577 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 URODP06132 367 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 MYL12AP19105 171 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 NNMTP40261 264 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 SLC25A11Q02978 314 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 SOX4Q06945 474 aaPredicted RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 ILF2Q12905 390 aaKnown RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 CHSY3Q70JA7 882 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 SLC35F5Q8WV83 523 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 ROPN1LQ96C74 230 aa15.24■□□□□ 0.03
SHH-201ENST00000297261 UXTQ9UBK9 157 aaPredicted RBP15.24■□□□□ 0.03
SHH-201ENST00000297261 TP73O15350 636 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 SEMA3DO95025 777 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 SELPP16109 830 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 RPS7P62081 194 aaKnown RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 ZNF284Q2VY69 593 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 RPS27LQ71UM5 84 aaKnown RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 PIWIL1Q96J94 861 aaKnown RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 TRPM5Q9NZQ8 1165 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 MTRRQ9UBK8 725 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 ATP6V1HQ9UI12 483 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 MRPS7Q9Y2R9 242 aaKnown RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 DLX3O60479 287 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 SERPINA1P01009 418 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 MTPNP58546 118 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 COX10Q12887 443 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 AP5B1Q2VPB7 878 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.23■□□□□ 0.03
SHH-201ENST00000297261 ASZ1Q8WWH4 475 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 PPP3R2Q96LZ3 170 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 TSSK3Q96PN8 268 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 ZBTB26Q9HCK0 441 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 EBF1Q9UH73 591 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 NENFQ9UMX5 172 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 PCP4L1A6NKN8 68 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 AQP12BA6NM10 295 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 YJEFN3A6XGL0 299 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 A8MX80 341 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 CLPXO76031 633 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 UGT2B4P06133 528 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 UMPSP11172 480 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 CES1P23141 567 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 GPC1P35052 558 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 KPNA1P52294 538 aaPredicted RBP15.23■□□□□ 0.03
SHH-201ENST00000297261 ACSM2AQ08AH3 577 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 COLEC12Q5KU26 742 aa15.23■□□□□ 0.03
SHH-201ENST00000297261 ACSM2BQ68CK6 577 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms