RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 CHPFQ8IZ52 775 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ZNF615Q8N8J6 731 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CANT1Q8WVQ1 401 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CRELD1Q96HD1 420 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 C1orf21Q9H246 121 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SACM1LQ9NTJ5 587 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 TIMM13Q9Y5L4 95 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 TLL2Q9Y6L7 1015 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 DHX15O43143 795 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 MSCO60682 206 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 GNAO1P09471 354 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 RAB2AP61019 212 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 BCL2L1Q07817 233 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SEMA5AQ13591 1074 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SLC9B1Q4ZJI4 515 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ANKRD26P1Q6NSI1 321 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 LGI2Q8N0V4 545 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 MRPL45Q9BRJ2 306 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 SNRNP25Q9BV90 132 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 FNDC11Q9BVV2 318 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 BHLHE41Q9C0J9 482 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 PORCNQ9H237 461 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 HMX1Q9NP08 348 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 ARL15Q9NXU5 204 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 SPG21Q9NZD8 308 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 COQ3Q9NZJ6 369 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 MAU2Q9Y6X3 613 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 TNFRSF11BO00300 401 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CHST10O43529 356 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 DDNO94850 711 aaPredicted RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 LGALS2P05162 132 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ZNF24P17028 368 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 F8A1P23610 371 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CLK3P49761 638 aaKnown RBP10.37□□□□□ -0.75
VCL-201ENST00000211998 RBBP4Q09028 425 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ZNF234Q14588 700 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 CRY1Q16526 586 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 PLA2G4EQ3MJ16 856 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 ZNF347Q96SE7 839 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 BCL2L14Q9BZR8 327 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 TREM1Q9NP99 234 aa10.37□□□□□ -0.75
VCL-201ENST00000211998 HOXA10P31260 410 aaPredicted RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 INHBEP58166 350 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 NOMO3P69849 1222 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 C15orf52Q6ZUT6 534 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 ASB18Q6ZVZ8 466 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 USP30Q70CQ3 517 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TFAP2DQ7Z6R9 452 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TRUB1Q8WWH5 349 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 STON2Q8WXE9 905 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 PAK6Q9NQU5 681 aaPredicted RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 MAB21L2Q9Y586 359 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 SGTAO43765 313 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 PQBP1O60828 265 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 IPO13O94829 963 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 MAGEA12P43365 314 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 MTAPQ13126 283 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 RAB39AQ14964 217 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 CRTC2Q53ET0 693 aaPredicted RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 ZC3H12AQ5D1E8 599 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 CLEC6AQ6EIG7 209 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 APOBEC3HQ6NTF7 200 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 DPF3Q92784 378 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 AKT1S1Q96B36 256 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 MRPL42Q9Y6G3 142 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 KIF20BQ96Q89 1820 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 NRCAMQ92823 1304 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 RIMS1Q86UR5 1692 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 IL7P13232 177 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 EPORP19235 508 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 AQP1P29972 269 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 RPL35P42766 123 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 AP5B1Q2VPB7 878 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 ZNF773Q6PK81 442 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TMIEQ8NEW7 156 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 CYP2W1Q8TAV3 490 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TRPM4Q8TD43 1214 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TEFMQ96QE5 360 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 BBS4Q96RK4 519 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 LGMNQ99538 433 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 GATA5Q9BWX5 397 aaPredicted RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 POLR1EQ9GZS1 481 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 RHOJQ9H4E5 214 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 FBXO5Q9UKT4 447 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 SLC22A2O15244 555 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 RSL1D1O76021 490 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 MTA2O94776 668 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 ADRB2P07550 413 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 RAP2AP10114 183 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 MTHFD1P11586 935 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 TYMPP19971 482 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 MATN1P21941 496 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 CSTF1Q05048 431 aaKnown RBP10.36□□□□□ -0.75
VCL-201ENST00000211998 SLC39A12Q504Y0 691 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 ARMC12Q5T9G4 340 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TMEM236Q5W0B7 351 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 FAM91A1Q658Y4 838 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TRIM40Q6P9F5 258 aa10.36□□□□□ -0.75
VCL-201ENST00000211998 TWIST2Q8WVJ9 160 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms