RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PNPLA7Q6ZV29 1317 aa21.17■□□□□ 0.98
SYNE2-228ENST00000639659 MAP3K5Q99683 1374 aa21.17■□□□□ 0.98
SYNE2-228ENST00000639659 QSER1Q2KHR3 1735 aa21.16■□□□□ 0.98
SYNE2-228ENST00000639659 HOXC9P31274 260 aa21.16■□□□□ 0.98
SYNE2-228ENST00000639659 ANKRD36BQ8N2N9 1353 aa21.15■□□□□ 0.98
SYNE2-228ENST00000639659 SLC16A10Q8TF71 515 aa21.15■□□□□ 0.98
SYNE2-228ENST00000639659 USHBP1Q8N6Y0 703 aa21.14■□□□□ 0.97
SYNE2-228ENST00000639659 ZCRB1Q8TBF4 217 aaKnown RBP21.14■□□□□ 0.97
SYNE2-228ENST00000639659 CCNL1Q9UK58 526 aaPredicted RBP21.14■□□□□ 0.97
SYNE2-228ENST00000639659 MEGF6O75095 1541 aa21.14■□□□□ 0.97
SYNE2-228ENST00000639659 SHANK3Q9BYB0 1731 aa21.13■□□□□ 0.97
SYNE2-228ENST00000639659 ST20-MTHFSA0A0A6YYL1 179 aa21.12■□□□□ 0.97
SYNE2-228ENST00000639659 NLGN2Q8NFZ4 835 aa21.12■□□□□ 0.97
SYNE2-228ENST00000639659 LY75O60449 1722 aa21.12■□□□□ 0.97
SYNE2-228ENST00000639659 C1QTNF8P60827 252 aa21.11■□□□□ 0.97
SYNE2-228ENST00000639659 RRS1Q15050 365 aaKnown RBP21.11■□□□□ 0.97
SYNE2-228ENST00000639659 NSD2O96028 1365 aa21.1■□□□□ 0.97
SYNE2-228ENST00000639659 MSL1Q68DK7 614 aa21.1■□□□□ 0.97
SYNE2-228ENST00000639659 USP47Q96K76 1375 aa21.1■□□□□ 0.97
SYNE2-228ENST00000639659 PUS7Q96PZ0 661 aaKnown RBP21.09■□□□□ 0.97
SYNE2-228ENST00000639659 GIGYF1O75420 1035 aaPredicted RBP21.08■□□□□ 0.97
SYNE2-228ENST00000639659 SMG6Q86US8 1419 aaKnown RBP21.08■□□□□ 0.97
SYNE2-228ENST00000639659 TESK2Q96S53 571 aa21.08■□□□□ 0.97
SYNE2-228ENST00000639659 GGNBP2Q9H3C7 697 aa21.08■□□□□ 0.97
SYNE2-228ENST00000639659 NBPF6Q5VWK0 638 aa21.07■□□□□ 0.96
SYNE2-228ENST00000639659 RAPGEF4Q8WZA2 1011 aa21.07■□□□□ 0.96
SYNE2-228ENST00000639659 NBPF4Q96M43 638 aa21.07■□□□□ 0.96
SYNE2-228ENST00000639659 COL24A1Q17RW2 1714 aa21.07■□□□□ 0.96
SYNE2-228ENST00000639659 RTL1A6NKG5 1358 aa21.06■□□□□ 0.96
SYNE2-228ENST00000639659 COL23A1Q86Y22 540 aaPredicted RBP21.05■□□□□ 0.96
SYNE2-228ENST00000639659 TATP17735 454 aaPredicted RBP21.04■□□□□ 0.96
SYNE2-228ENST00000639659 C5P01031 1676 aa21.02■□□□□ 0.96
SYNE2-228ENST00000639659 GOLGB1Q14789 3259 aaKnown RBP21.02■□□□□ 0.96
SYNE2-228ENST00000639659 YBX3P16989 372 aaKnown RBP eCLIP21.02■□□□□ 0.96
SYNE2-228ENST00000639659 KIF20BQ96Q89 1820 aa21.01■□□□□ 0.95
SYNE2-228ENST00000639659 FYB1O15117 783 aa21■□□□□ 0.95
SYNE2-228ENST00000639659 MPRIPQ6WCQ1 1025 aa21■□□□□ 0.95
SYNE2-228ENST00000639659 PCDH11XQ9BZA7 1347 aa21■□□□□ 0.95
SYNE2-228ENST00000639659 PCDH11YQ9BZA8 1340 aa21■□□□□ 0.95
SYNE2-228ENST00000639659 PALLDQ8WX93 1383 aa20.99■□□□□ 0.95
SYNE2-228ENST00000639659 TMF1P82094 1093 aa20.99■□□□□ 0.95
SYNE2-228ENST00000639659 HSP90AB2PQ58FF8 381 aa20.99■□□□□ 0.95
SYNE2-228ENST00000639659 CGNL1Q0VF96 1302 aa20.99■□□□□ 0.95
SYNE2-228ENST00000639659 GRIN3BO60391 1043 aa20.98■□□□□ 0.95
SYNE2-228ENST00000639659 SLC24A1O60721 1099 aa20.98■□□□□ 0.95
SYNE2-228ENST00000639659 WWC3Q9ULE0 1092 aa20.97■□□□□ 0.95
SYNE2-228ENST00000639659 FLT4P35916 1363 aa20.97■□□□□ 0.95
SYNE2-228ENST00000639659 PHF14O94880 888 aa20.96■□□□□ 0.95
SYNE2-228ENST00000639659 AK7Q96M32 723 aa20.96■□□□□ 0.95
SYNE2-228ENST00000639659 TAF1LQ8IZX4 1826 aa20.96■□□□□ 0.95
SYNE2-228ENST00000639659 PPM1GO15355 546 aaPredicted RBP20.95■□□□□ 0.94
SYNE2-228ENST00000639659 INSRP06213 1382 aa20.95■□□□□ 0.94
SYNE2-228ENST00000639659 TOGARAM1Q9Y4F4 1720 aa20.95■□□□□ 0.94
SYNE2-228ENST00000639659 C4BP0C0L5 1744 aa20.93■□□□□ 0.94
SYNE2-228ENST00000639659 ITGB4P16144 1822 aa20.93■□□□□ 0.94
SYNE2-228ENST00000639659 SMIM5Q71RC9 77 aa20.93■□□□□ 0.94
SYNE2-228ENST00000639659 ATP10DQ9P241 1426 aa20.93■□□□□ 0.94
SYNE2-228ENST00000639659 CYP27B1O15528 508 aa20.92■□□□□ 0.94
SYNE2-228ENST00000639659 FLAD1Q8NFF5 587 aa20.92■□□□□ 0.94
SYNE2-228ENST00000639659 ZNF526Q8TF50 670 aaPredicted RBP20.92■□□□□ 0.94
SYNE2-228ENST00000639659 EMILIN1Q9Y6C2 1016 aa20.92■□□□□ 0.94
SYNE2-228ENST00000639659 NSD3Q9BZ95 1437 aa20.9■□□□□ 0.94
SYNE2-228ENST00000639659 SMARCC1Q92922 1105 aaPredicted RBP20.9■□□□□ 0.94
SYNE2-228ENST00000639659 CD2APQ9Y5K6 639 aa20.9■□□□□ 0.94
SYNE2-228ENST00000639659 PKD1L3Q7Z443 1732 aa20.89■□□□□ 0.93
SYNE2-228ENST00000639659 CDCA8Q53HL2 280 aa20.88■□□□□ 0.93
SYNE2-228ENST00000639659 AMIGO3Q86WK7 504 aa20.88■□□□□ 0.93
SYNE2-228ENST00000639659 GPBP1L1Q9HC44 474 aaPredicted RBP20.88■□□□□ 0.93
SYNE2-228ENST00000639659 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.87■□□□□ 0.93
SYNE2-228ENST00000639659 HMGB2P26583 209 aaKnown RBP20.87■□□□□ 0.93
SYNE2-228ENST00000639659 PIGBQ92521 554 aa20.87■□□□□ 0.93
SYNE2-228ENST00000639659 UBR3Q6ZT12 1888 aa20.87■□□□□ 0.93
SYNE2-228ENST00000639659 KIF24Q5T7B8 1368 aa20.86■□□□□ 0.93
SYNE2-228ENST00000639659 IGSF1Q8N6C5 1336 aa20.86■□□□□ 0.93
SYNE2-228ENST00000639659 SPG7Q9UQ90 795 aa20.86■□□□□ 0.93
SYNE2-228ENST00000639659 POLR3GLQ9BT43 218 aa20.85■□□□□ 0.93
SYNE2-228ENST00000639659 LINC00116Q8NCU8 138 aa20.84■□□□□ 0.93
SYNE2-228ENST00000639659 CARD14Q9BXL6 1004 aa20.84■□□□□ 0.93
SYNE2-228ENST00000639659 TMOD3Q9NYL9 352 aa20.84■□□□□ 0.93
SYNE2-228ENST00000639659 LOC102724428A0A0B4J2F2 783 aa20.83■□□□□ 0.93
SYNE2-228ENST00000639659 GNPATO15228 680 aa20.83■□□□□ 0.93
SYNE2-228ENST00000639659 SIK1P57059 783 aa20.83■□□□□ 0.93
SYNE2-228ENST00000639659 CEP350Q5VT06 3117 aa20.81■□□□□ 0.92
SYNE2-228ENST00000639659 SSFA2P28290 1259 aa20.8■□□□□ 0.92
SYNE2-228ENST00000639659 ATP6V1AP38606 617 aa20.8■□□□□ 0.92
SYNE2-228ENST00000639659 TNNT2P45379 298 aaPredicted RBP20.8■□□□□ 0.92
SYNE2-228ENST00000639659 EYA1Q99502 592 aa20.8■□□□□ 0.92
SYNE2-228ENST00000639659 ASAP1Q9ULH1 1129 aa20.8■□□□□ 0.92
SYNE2-228ENST00000639659 MAP2P11137 1827 aaKnown RBP20.8■□□□□ 0.92
SYNE2-228ENST00000639659 ANKRD26Q9UPS8 1709 aa20.79■□□□□ 0.92
SYNE2-228ENST00000639659 ADCY9O60503 1353 aa20.78■□□□□ 0.92
SYNE2-228ENST00000639659 ITPK1Q13572 414 aa20.78■□□□□ 0.92
SYNE2-228ENST00000639659 NKX1-1Q15270 411 aaPredicted RBP20.78■□□□□ 0.92
SYNE2-228ENST00000639659 NCAPD2Q15021 1401 aa20.78■□□□□ 0.92
SYNE2-228ENST00000639659 IFNL2Q8IZJ0 200 aa20.77■□□□□ 0.92
SYNE2-228ENST00000639659 WASHC2AQ641Q2 1341 aa20.77■□□□□ 0.91
SYNE2-228ENST00000639659 PHKG2P15735 406 aa20.76■□□□□ 0.91
SYNE2-228ENST00000639659 MMP10P09238 476 aa20.75■□□□□ 0.91
SYNE2-228ENST00000639659 RBM42Q9BTD8 480 aaKnown RBP20.75■□□□□ 0.91
SYNE2-228ENST00000639659 HSPA6P17066 643 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms