RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GPR162Q16538 588 aa27.31■■□□□ 1.96
CLN3-262ENST00000637699 CHD4Q14839 1912 aa27.31■■□□□ 1.96
CLN3-262ENST00000637699 ANKRD36BQ8N2N9 1353 aa27.31■■□□□ 1.96
CLN3-262ENST00000637699 RGPD2P0DJD1 1756 aa27.28■■□□□ 1.96
CLN3-262ENST00000637699 DOT1LQ8TEK3 1739 aa27.27■■□□□ 1.96
CLN3-262ENST00000637699 RRS1Q15050 365 aaKnown RBP27.27■■□□□ 1.96
CLN3-262ENST00000637699 MEGF6O75095 1541 aa27.26■■□□□ 1.96
CLN3-262ENST00000637699 NSD2O96028 1365 aa27.26■■□□□ 1.95
CLN3-262ENST00000637699 PELP1Q8IZL8 1130 aaKnown RBP27.26■■□□□ 1.95
CLN3-262ENST00000637699 QSER1Q2KHR3 1735 aa27.26■■□□□ 1.95
CLN3-262ENST00000637699 SLC24A1O60721 1099 aa27.25■■□□□ 1.95
CLN3-262ENST00000637699 NBPF6Q5VWK0 638 aa27.25■■□□□ 1.95
CLN3-262ENST00000637699 USHBP1Q8N6Y0 703 aa27.25■■□□□ 1.95
CLN3-262ENST00000637699 NBPF4Q96M43 638 aa27.25■■□□□ 1.95
CLN3-262ENST00000637699 CCNL1Q9UK58 526 aaPredicted RBP27.25■■□□□ 1.95
CLN3-262ENST00000637699 GGNBP2Q9H3C7 697 aa27.24■■□□□ 1.95
CLN3-262ENST00000637699 TUBGCP6Q96RT7 1819 aa27.23■■□□□ 1.95
CLN3-262ENST00000637699 SHANK3Q9BYB0 1731 aa27.23■■□□□ 1.95
CLN3-262ENST00000637699 GOLGB1Q14789 3259 aaKnown RBP27.22■■□□□ 1.95
CLN3-262ENST00000637699 FYB1O15117 783 aa27.22■■□□□ 1.95
CLN3-262ENST00000637699 MSH5O43196 834 aa27.22■■□□□ 1.95
CLN3-262ENST00000637699 LY75O60449 1722 aa27.21■■□□□ 1.95
CLN3-262ENST00000637699 NLGN2Q8NFZ4 835 aa27.21■■□□□ 1.95
CLN3-262ENST00000637699 RTL1A6NKG5 1358 aa27.21■■□□□ 1.95
CLN3-262ENST00000637699 RAPGEF4Q8WZA2 1011 aa27.2■■□□□ 1.94
CLN3-262ENST00000637699 USP47Q96K76 1375 aa27.2■■□□□ 1.94
CLN3-262ENST00000637699 COL24A1Q17RW2 1714 aa27.19■■□□□ 1.94
CLN3-262ENST00000637699 C1QTNF8P60827 252 aa27.18■■□□□ 1.94
CLN3-262ENST00000637699 CGNL1Q0VF96 1302 aa27.17■■□□□ 1.94
CLN3-262ENST00000637699 TMF1P82094 1093 aa27.17■■□□□ 1.94
CLN3-262ENST00000637699 COL23A1Q86Y22 540 aaPredicted RBP27.17■■□□□ 1.94
CLN3-262ENST00000637699 SMG6Q86US8 1419 aaKnown RBP27.16■■□□□ 1.94
CLN3-262ENST00000637699 SENP3-EIF4A1A0A087X0R7 540 aa27.16■■□□□ 1.94
CLN3-262ENST00000637699 TATP17735 454 aaPredicted RBP27.16■■□□□ 1.94
CLN3-262ENST00000637699 HSP90AB2PQ58FF8 381 aa27.15■■□□□ 1.94
CLN3-262ENST00000637699 MSL1Q68DK7 614 aa27.13■■□□□ 1.93
CLN3-262ENST00000637699 INSRP06213 1382 aa27.1■■□□□ 1.93
CLN3-262ENST00000637699 MPRIPQ6WCQ1 1025 aa27.1■■□□□ 1.93
CLN3-262ENST00000637699 PCDH11XQ9BZA7 1347 aa27.1■■□□□ 1.93
CLN3-262ENST00000637699 PCDH11YQ9BZA8 1340 aa27.1■■□□□ 1.93
CLN3-262ENST00000637699 YBX3P16989 372 aaKnown RBP eCLIP27.09■■□□□ 1.93
CLN3-262ENST00000637699 FLT4P35916 1363 aa27.08■■□□□ 1.93
CLN3-262ENST00000637699 GIGYF1O75420 1035 aaPredicted RBP27.07■■□□□ 1.92
CLN3-262ENST00000637699 PALLDQ8WX93 1383 aa27.07■■□□□ 1.92
CLN3-262ENST00000637699 CYP27B1O15528 508 aa27.06■■□□□ 1.92
CLN3-262ENST00000637699 GRIN3BO60391 1043 aa27.06■■□□□ 1.92
CLN3-262ENST00000637699 C5P01031 1676 aa27.05■■□□□ 1.92
CLN3-262ENST00000637699 CDCA8Q53HL2 280 aa27.05■■□□□ 1.92
CLN3-262ENST00000637699 KIF20BQ96Q89 1820 aa27.04■■□□□ 1.92
CLN3-262ENST00000637699 FLAD1Q8NFF5 587 aa27.04■■□□□ 1.92
CLN3-262ENST00000637699 EMILIN1Q9Y6C2 1016 aa27.04■■□□□ 1.92
CLN3-262ENST00000637699 KIF24Q5T7B8 1368 aa27.03■■□□□ 1.92
CLN3-262ENST00000637699 CARD14Q9BXL6 1004 aa27.03■■□□□ 1.92
CLN3-262ENST00000637699 PPM1GO15355 546 aaPredicted RBP27.02■■□□□ 1.92
CLN3-262ENST00000637699 HMGB2P26583 209 aaKnown RBP27.02■■□□□ 1.92
CLN3-262ENST00000637699 SMARCC1Q92922 1105 aaPredicted RBP27■■□□□ 1.91
CLN3-262ENST00000637699 AK7Q96M32 723 aa27■■□□□ 1.91
CLN3-262ENST00000637699 CD2APQ9Y5K6 639 aa27■■□□□ 1.91
CLN3-262ENST00000637699 TAF1LQ8IZX4 1826 aa27■■□□□ 1.91
CLN3-262ENST00000637699 SMIM5Q71RC9 77 aa26.98■■□□□ 1.91
CLN3-262ENST00000637699 PIGBQ92521 554 aa26.98■■□□□ 1.91
CLN3-262ENST00000637699 NSD3Q9BZ95 1437 aa26.98■■□□□ 1.91
CLN3-262ENST00000637699 TOGARAM1Q9Y4F4 1720 aa26.97■■□□□ 1.91
CLN3-262ENST00000637699 PHF14O94880 888 aa26.97■■□□□ 1.91
CLN3-262ENST00000637699 AMIGO3Q86WK7 504 aa26.97■■□□□ 1.91
CLN3-262ENST00000637699 ITGB4P16144 1822 aa26.97■■□□□ 1.91
CLN3-262ENST00000637699 C4BP0C0L5 1744 aa26.96■■□□□ 1.91
CLN3-262ENST00000637699 SPG7Q9UQ90 795 aa26.95■■□□□ 1.9
CLN3-262ENST00000637699 NKX1-1Q15270 411 aaPredicted RBP26.94■■□□□ 1.9
CLN3-262ENST00000637699 PKD1L3Q7Z443 1732 aa26.93■■□□□ 1.9
CLN3-262ENST00000637699 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.93■■□□□ 1.9
CLN3-262ENST00000637699 EYA1Q99502 592 aa26.91■■□□□ 1.9
CLN3-262ENST00000637699 WWC3Q9ULE0 1092 aa26.91■■□□□ 1.9
CLN3-262ENST00000637699 WASHC2AQ641Q2 1341 aa26.9■■□□□ 1.9
CLN3-262ENST00000637699 NCAPD2Q15021 1401 aa26.9■■□□□ 1.9
CLN3-262ENST00000637699 ATP10DQ9P241 1426 aa26.9■■□□□ 1.9
CLN3-262ENST00000637699 LOC102724428A0A0B4J2F2 783 aa26.9■■□□□ 1.9
CLN3-262ENST00000637699 SIK1P57059 783 aa26.9■■□□□ 1.9
CLN3-262ENST00000637699 LINC00116Q8NCU8 138 aa26.9■■□□□ 1.9
CLN3-262ENST00000637699 CEP350Q5VT06 3117 aa26.89■■□□□ 1.9
CLN3-262ENST00000637699 TMOD3Q9NYL9 352 aa26.89■■□□□ 1.9
CLN3-262ENST00000637699 UBR3Q6ZT12 1888 aa26.88■■□□□ 1.89
CLN3-262ENST00000637699 ASAP1Q9ULH1 1129 aa26.88■■□□□ 1.89
CLN3-262ENST00000637699 SSFA2P28290 1259 aa26.87■■□□□ 1.89
CLN3-262ENST00000637699 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.87■■□□□ 1.89
CLN3-262ENST00000637699 IGSF1Q8N6C5 1336 aa26.87■■□□□ 1.89
CLN3-262ENST00000637699 POLKQ9UBT6 870 aa26.86■■□□□ 1.89
CLN3-262ENST00000637699 MAP2P11137 1827 aaKnown RBP26.86■■□□□ 1.89
CLN3-262ENST00000637699 PHKG2P15735 406 aa26.85■■□□□ 1.89
CLN3-262ENST00000637699 ITPK1Q13572 414 aa26.85■■□□□ 1.89
CLN3-262ENST00000637699 IFNL2Q8IZJ0 200 aa26.85■■□□□ 1.89
CLN3-262ENST00000637699 GPBP1L1Q9HC44 474 aaPredicted RBP26.85■■□□□ 1.89
CLN3-262ENST00000637699 GNPATO15228 680 aa26.84■■□□□ 1.89
CLN3-262ENST00000637699 ATP6V1AP38606 617 aa26.84■■□□□ 1.89
CLN3-262ENST00000637699 ZNF526Q8TF50 670 aaPredicted RBP26.84■■□□□ 1.89
CLN3-262ENST00000637699 POLR3GLQ9BT43 218 aa26.84■■□□□ 1.89
CLN3-262ENST00000637699 ANKRD26Q9UPS8 1709 aa26.84■■□□□ 1.89
CLN3-262ENST00000637699 TNNT2P45379 298 aaPredicted RBP26.83■■□□□ 1.89
CLN3-262ENST00000637699 TRIM26Q12899 539 aaPredicted RBP26.83■■□□□ 1.89
CLN3-262ENST00000637699 ATG3Q9NT62 314 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms