RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ZCRB1Q8TBF4 217 aaKnown RBP24.68■■□□□ 1.54
CLN3-243ENST00000635973 TNNT2P45379 298 aaPredicted RBP24.67■■□□□ 1.54
CLN3-243ENST00000635973 SLC15A2Q16348 729 aa24.67■■□□□ 1.54
CLN3-243ENST00000635973 RAPGEF4Q8WZA2 1011 aa24.67■■□□□ 1.54
CLN3-243ENST00000635973 SYTL4Q96C24 671 aaPredicted RBP24.67■■□□□ 1.54
CLN3-243ENST00000635973 AMER1Q5JTC6 1135 aaPredicted RBP24.66■■□□□ 1.54
CLN3-243ENST00000635973 MORC1Q86VD1 984 aa24.66■■□□□ 1.54
CLN3-243ENST00000635973 CASZ1Q86V15 1759 aa24.66■■□□□ 1.54
CLN3-243ENST00000635973 FLT4P35916 1363 aa24.66■■□□□ 1.54
CLN3-243ENST00000635973 PER1O15534 1290 aaPredicted RBP24.65■■□□□ 1.54
CLN3-243ENST00000635973 CNGB1Q14028 1251 aaPredicted RBP24.65■■□□□ 1.54
CLN3-243ENST00000635973 NBPF6Q5VWK0 638 aa24.65■■□□□ 1.54
CLN3-243ENST00000635973 NBPF4Q96M43 638 aa24.65■■□□□ 1.54
CLN3-243ENST00000635973 HSP90AB2PQ58FF8 381 aa24.64■■□□□ 1.54
CLN3-243ENST00000635973 CC2D1BQ5T0F9 858 aaKnown RBP24.64■■□□□ 1.54
CLN3-243ENST00000635973 USHBP1Q8N6Y0 703 aa24.64■■□□□ 1.54
CLN3-243ENST00000635973 INSRP06213 1382 aa24.64■■□□□ 1.53
CLN3-243ENST00000635973 KIF24Q5T7B8 1368 aa24.64■■□□□ 1.53
CLN3-243ENST00000635973 DCAF8L1A6NGE4 600 aa24.63■■□□□ 1.53
CLN3-243ENST00000635973 ZBTB7AO95365 584 aa24.63■■□□□ 1.53
CLN3-243ENST00000635973 TATP17735 454 aaPredicted RBP24.63■■□□□ 1.53
CLN3-243ENST00000635973 DOT1LQ8TEK3 1739 aa24.63■■□□□ 1.53
CLN3-243ENST00000635973 MEGF6O75095 1541 aa24.62■■□□□ 1.53
CLN3-243ENST00000635973 PPM1GO15355 546 aaPredicted RBP24.62■■□□□ 1.53
CLN3-243ENST00000635973 PDGFDQ9GZP0 370 aaPredicted RBP24.62■■□□□ 1.53
CLN3-243ENST00000635973 PRIM1P49642 420 aaKnown RBP24.61■■□□□ 1.53
CLN3-243ENST00000635973 SHANK3Q9BYB0 1731 aa24.61■■□□□ 1.53
CLN3-243ENST00000635973 MAP2P11137 1827 aaKnown RBP24.6■■□□□ 1.53
CLN3-243ENST00000635973 DDX10Q13206 875 aaKnown RBP24.59■■□□□ 1.53
CLN3-243ENST00000635973 ATF5Q9Y2D1 282 aaPredicted RBP24.59■■□□□ 1.53
CLN3-243ENST00000635973 EMILIN1Q9Y6C2 1016 aa24.59■■□□□ 1.53
CLN3-243ENST00000635973 NPC1L1Q9UHC9 1359 aa24.58■■□□□ 1.53
CLN3-243ENST00000635973 ZNF316A6NFI3 1004 aaPredicted RBP24.58■■□□□ 1.53
CLN3-243ENST00000635973 SLC27A3Q5K4L6 730 aa24.58■■□□□ 1.53
CLN3-243ENST00000635973 YY1P25490 414 aa24.56■■□□□ 1.52
CLN3-243ENST00000635973 MTFR1LQ9H019 292 aa24.56■■□□□ 1.52
CLN3-243ENST00000635973 PAPPAQ13219 1627 aa24.55■■□□□ 1.52
CLN3-243ENST00000635973 PCDH11XQ9BZA7 1347 aa24.55■■□□□ 1.52
CLN3-243ENST00000635973 PCDH11YQ9BZA8 1340 aa24.55■■□□□ 1.52
CLN3-243ENST00000635973 LRRC4BQ9NT99 713 aa24.54■■□□□ 1.52
CLN3-243ENST00000635973 POLKQ9UBT6 870 aa24.54■■□□□ 1.52
CLN3-243ENST00000635973 PTGER2P43116 358 aa24.52■■□□□ 1.52
CLN3-243ENST00000635973 LY75O60449 1722 aa24.52■■□□□ 1.52
CLN3-243ENST00000635973 ZNF827Q17R98 1081 aa24.51■■□□□ 1.51
CLN3-243ENST00000635973 TFCP2L1Q9NZI6 479 aa24.49■■□□□ 1.51
CLN3-243ENST00000635973 CCNL1Q9UK58 526 aaPredicted RBP24.49■■□□□ 1.51
CLN3-243ENST00000635973 KCNQ4P56696 695 aa24.48■■□□□ 1.51
CLN3-243ENST00000635973 QSER1Q2KHR3 1735 aa24.48■■□□□ 1.51
CLN3-243ENST00000635973 SPG7Q9UQ90 795 aa24.48■■□□□ 1.51
CLN3-243ENST00000635973 AKT1S1Q96B36 256 aa24.47■■□□□ 1.51
CLN3-243ENST00000635973 PKD1L3Q7Z443 1732 aa24.45■■□□□ 1.5
CLN3-243ENST00000635973 HMGB2P26583 209 aaKnown RBP24.45■■□□□ 1.5
CLN3-243ENST00000635973 MPRIPQ6WCQ1 1025 aa24.45■■□□□ 1.5
CLN3-243ENST00000635973 SLC16A10Q8TF71 515 aa24.44■■□□□ 1.5
CLN3-243ENST00000635973 ARXQ96QS3 562 aa24.44■■□□□ 1.5
CLN3-243ENST00000635973 EYA1Q99502 592 aa24.44■■□□□ 1.5
CLN3-243ENST00000635973 FHDC1Q9C0D6 1143 aaPredicted RBP24.44■■□□□ 1.5
CLN3-243ENST00000635973 ITGB4P16144 1822 aa24.43■■□□□ 1.5
CLN3-243ENST00000635973 CYP27B1O15528 508 aa24.43■■□□□ 1.5
CLN3-243ENST00000635973 MTHFSP49914 203 aa24.43■■□□□ 1.5
CLN3-243ENST00000635973 TUBGCP6Q96RT7 1819 aa24.42■■□□□ 1.5
CLN3-243ENST00000635973 POLD1P28340 1107 aa24.42■■□□□ 1.5
CLN3-243ENST00000635973 MSH5O43196 834 aa24.41■■□□□ 1.5
CLN3-243ENST00000635973 SGIP1Q9BQI5 828 aa24.41■■□□□ 1.5
CLN3-243ENST00000635973 PNPLA7Q6ZV29 1317 aa24.4■■□□□ 1.5
CLN3-243ENST00000635973 EIF4A2Q14240 407 aaKnown RBP24.4■■□□□ 1.5
CLN3-243ENST00000635973 SYT17Q9BSW7 474 aa24.4■■□□□ 1.5
CLN3-243ENST00000635973 NCAPD2Q15021 1401 aa24.4■■□□□ 1.5
CLN3-243ENST00000635973 SMARCC1Q92922 1105 aaPredicted RBP24.39■■□□□ 1.49
CLN3-243ENST00000635973 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.39■■□□□ 1.49
CLN3-243ENST00000635973 PALLDQ8WX93 1383 aa24.39■■□□□ 1.49
CLN3-243ENST00000635973 C5P01031 1676 aa24.38■■□□□ 1.49
CLN3-243ENST00000635973 TOGARAM1Q9Y4F4 1720 aa24.38■■□□□ 1.49
CLN3-243ENST00000635973 PPP2R1AP30153 589 aa24.37■■□□□ 1.49
CLN3-243ENST00000635973 KLHL34Q8N239 644 aa24.37■■□□□ 1.49
CLN3-243ENST00000635973 IFNL2Q8IZJ0 200 aa24.36■■□□□ 1.49
CLN3-243ENST00000635973 NKX1-1Q15270 411 aaPredicted RBP24.35■■□□□ 1.49
CLN3-243ENST00000635973 RALBP1Q15311 655 aa24.35■■□□□ 1.49
CLN3-243ENST00000635973 CFAP53Q96M91 514 aa24.35■■□□□ 1.49
CLN3-243ENST00000635973 TAF1LQ8IZX4 1826 aa24.35■■□□□ 1.49
CLN3-243ENST00000635973 TMOD3Q9NYL9 352 aa24.34■■□□□ 1.49
CLN3-243ENST00000635973 PIGBQ92521 554 aa24.33■■□□□ 1.49
CLN3-243ENST00000635973 DIAPH1O60610 1272 aaKnown RBP24.32■■□□□ 1.48
CLN3-243ENST00000635973 PHKG2P15735 406 aa24.32■■□□□ 1.48
CLN3-243ENST00000635973 FLAD1Q8NFF5 587 aa24.31■■□□□ 1.48
CLN3-243ENST00000635973 UTRNP46939 3433 aa24.31■■□□□ 1.48
CLN3-243ENST00000635973 COL24A1Q17RW2 1714 aa24.3■■□□□ 1.48
CLN3-243ENST00000635973 IL13P35225 146 aa24.3■■□□□ 1.48
CLN3-243ENST00000635973 COL23A1Q86Y22 540 aaPredicted RBP24.3■■□□□ 1.48
CLN3-243ENST00000635973 AK7Q96M32 723 aa24.3■■□□□ 1.48
CLN3-243ENST00000635973 IGSF1Q8N6C5 1336 aa24.3■■□□□ 1.48
CLN3-243ENST00000635973 MAP3K5Q99683 1374 aa24.29■■□□□ 1.48
CLN3-243ENST00000635973 PLEKHO1Q53GL0 409 aaPredicted RBP24.29■■□□□ 1.48
CLN3-243ENST00000635973 PLEKHG2Q9H7P9 1386 aa24.29■■□□□ 1.48
CLN3-243ENST00000635973 C4BP0C0L5 1744 aa24.28■■□□□ 1.48
CLN3-243ENST00000635973 COL3A1P02461 1466 aaPredicted RBP24.27■■□□□ 1.48
CLN3-243ENST00000635973 HSP90AB1P08238 724 aaKnown RBP24.27■■□□□ 1.48
CLN3-243ENST00000635973 GPR162Q16538 588 aa24.26■■□□□ 1.47
CLN3-243ENST00000635973 AMOTQ4VCS5 1084 aa24.26■■□□□ 1.47
CLN3-243ENST00000635973 MYBBP1AQ9BQG0 1328 aaKnown RBP24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms