RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 RGPD3A6NKT7 1758 aaPredicted RBP24.46■■□□□ 1.51
CLN3-239ENST00000628023 RGPD4Q7Z3J3 1758 aa24.46■■□□□ 1.51
CLN3-239ENST00000628023 IL2RBP14784 551 aa24.45■■□□□ 1.5
CLN3-239ENST00000628023 PTF1AQ7RTS3 328 aa24.44■■□□□ 1.5
CLN3-239ENST00000628023 TNS2Q63HR2 1409 aa24.44■■□□□ 1.5
CLN3-239ENST00000628023 MTHFSP49914 203 aa24.43■■□□□ 1.5
CLN3-239ENST00000628023 PPP1R1BQ9UD71 204 aaPredicted RBP24.43■■□□□ 1.5
CLN3-239ENST00000628023 KCNQ2O43526 872 aa24.42■■□□□ 1.5
CLN3-239ENST00000628023 RGPD2P0DJD1 1756 aa24.4■■□□□ 1.5
CLN3-239ENST00000628023 EIF4A2Q14240 407 aaKnown RBP24.4■■□□□ 1.5
CLN3-239ENST00000628023 NBPF6Q5VWK0 638 aa24.4■■□□□ 1.5
CLN3-239ENST00000628023 USHBP1Q8N6Y0 703 aa24.4■■□□□ 1.5
CLN3-239ENST00000628023 NBPF4Q96M43 638 aa24.4■■□□□ 1.5
CLN3-239ENST00000628023 TXNRD1Q16881 649 aa24.38■■□□□ 1.49
CLN3-239ENST00000628023 PROM2Q8N271 834 aa24.38■■□□□ 1.49
CLN3-239ENST00000628023 PPP2R1AP30153 589 aa24.37■■□□□ 1.49
CLN3-239ENST00000628023 ANO8Q9HCE9 1232 aaPredicted RBP24.37■■□□□ 1.49
CLN3-239ENST00000628023 STK32BQ9NY57 414 aa24.37■■□□□ 1.49
CLN3-239ENST00000628023 ACSBG1Q96GR2 724 aa24.36■■□□□ 1.49
CLN3-239ENST00000628023 RALBP1Q15311 655 aa24.35■■□□□ 1.49
CLN3-239ENST00000628023 CFAP53Q96M91 514 aa24.35■■□□□ 1.49
CLN3-239ENST00000628023 DCAF8L1A6NGE4 600 aa24.34■■□□□ 1.49
CLN3-239ENST00000628023 RAPGEF4Q8WZA2 1011 aa24.34■■□□□ 1.49
CLN3-239ENST00000628023 EYA1Q99502 592 aa24.34■■□□□ 1.49
CLN3-239ENST00000628023 KAT6BQ8WYB5 2073 aa24.34■■□□□ 1.49
CLN3-239ENST00000628023 DIAPH1O60610 1272 aaKnown RBP24.32■■□□□ 1.48
CLN3-239ENST00000628023 TATP17735 454 aaPredicted RBP24.31■■□□□ 1.48
CLN3-239ENST00000628023 SLC15A2Q16348 729 aa24.31■■□□□ 1.48
CLN3-239ENST00000628023 NHSQ6T4R5 1651 aa24.3■■□□□ 1.48
CLN3-239ENST00000628023 MEGF6O75095 1541 aa24.3■■□□□ 1.48
CLN3-239ENST00000628023 IL13P35225 146 aa24.3■■□□□ 1.48
CLN3-239ENST00000628023 DDX54Q8TDD1 881 aaKnown RBP24.3■■□□□ 1.48
CLN3-239ENST00000628023 IGSF1Q8N6C5 1336 aa24.3■■□□□ 1.48
CLN3-239ENST00000628023 NCAPD2Q15021 1401 aa24.27■■□□□ 1.48
CLN3-239ENST00000628023 COL3A1P02461 1466 aaPredicted RBP24.27■■□□□ 1.48
CLN3-239ENST00000628023 ZBTB7AO95365 584 aa24.27■■□□□ 1.48
CLN3-239ENST00000628023 MYBBP1AQ9BQG0 1328 aaKnown RBP24.26■■□□□ 1.47
CLN3-239ENST00000628023 U2SURPO15042 1029 aaKnown RBP24.25■■□□□ 1.47
CLN3-239ENST00000628023 CASZ1Q86V15 1759 aa24.24■■□□□ 1.47
CLN3-239ENST00000628023 SULT6B1Q6IMI4 303 aa24.24■■□□□ 1.47
CLN3-239ENST00000628023 ZCRB1Q8TBF4 217 aaKnown RBP24.24■■□□□ 1.47
CLN3-239ENST00000628023 PDGFDQ9GZP0 370 aaPredicted RBP24.24■■□□□ 1.47
CLN3-239ENST00000628023 PRKRIP1Q9H875 184 aaPredicted RBP24.24■■□□□ 1.47
CLN3-239ENST00000628023 NUDCQ9Y266 331 aa24.23■■□□□ 1.47
CLN3-239ENST00000628023 ATF5Q9Y2D1 282 aaPredicted RBP24.23■■□□□ 1.47
CLN3-239ENST00000628023 BTAF1O14981 1849 aa24.22■■□□□ 1.47
CLN3-239ENST00000628023 AEBP1Q8IUX7 1158 aa24.22■■□□□ 1.47
CLN3-239ENST00000628023 SYTL4Q96C24 671 aaPredicted RBP24.22■■□□□ 1.47
CLN3-239ENST00000628023 HMOX1P09601 288 aa24.21■■□□□ 1.47
CLN3-239ENST00000628023 MTFR1LQ9H019 292 aa24.21■■□□□ 1.47
CLN3-239ENST00000628023 ANP32CO43423 234 aa24.2■■□□□ 1.46
CLN3-239ENST00000628023 SLC27A3Q5K4L6 730 aa24.2■■□□□ 1.46
CLN3-239ENST00000628023 SPG7Q9UQ90 795 aa24.2■■□□□ 1.46
CLN3-239ENST00000628023 PCDH11XQ9BZA7 1347 aa24.19■■□□□ 1.46
CLN3-239ENST00000628023 PCDH11YQ9BZA8 1340 aa24.19■■□□□ 1.46
CLN3-239ENST00000628023 KDRP35968 1356 aa24.18■■□□□ 1.46
CLN3-239ENST00000628023 PTGER2P43116 358 aa24.18■■□□□ 1.46
CLN3-239ENST00000628023 PRIM1P49642 420 aaKnown RBP24.18■■□□□ 1.46
CLN3-239ENST00000628023 YY1P25490 414 aa24.17■■□□□ 1.46
CLN3-239ENST00000628023 PLEKHG2Q9H7P9 1386 aa24.16■■□□□ 1.46
CLN3-239ENST00000628023 PKD1L3Q7Z443 1732 aa24.16■■□□□ 1.46
CLN3-239ENST00000628023 SHANK3Q9BYB0 1731 aa24.16■■□□□ 1.46
CLN3-239ENST00000628023 U2AF1L5P0DN76 240 aaPredicted RBP24.15■■□□□ 1.46
CLN3-239ENST00000628023 U2AF1Q01081 240 aaKnown RBP eCLIP24.15■■□□□ 1.46
CLN3-239ENST00000628023 PLEKHO1Q53GL0 409 aaPredicted RBP24.15■■□□□ 1.46
CLN3-239ENST00000628023 LRRC4BQ9NT99 713 aa24.15■■□□□ 1.46
CLN3-239ENST00000628023 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.15■■□□□ 1.46
CLN3-239ENST00000628023 AMOTQ4VCS5 1084 aa24.13■■□□□ 1.45
CLN3-239ENST00000628023 ZNF827Q17R98 1081 aa24.12■■□□□ 1.45
CLN3-239ENST00000628023 PAPPAQ13219 1627 aa24.11■■□□□ 1.45
CLN3-239ENST00000628023 CYP27B1O15528 508 aa24.1■■□□□ 1.45
CLN3-239ENST00000628023 ZNF530Q6P9A1 599 aaPredicted RBP24.1■■□□□ 1.45
CLN3-239ENST00000628023 SLC16A10Q8TF71 515 aa24.1■■□□□ 1.45
CLN3-239ENST00000628023 AKT1S1Q96B36 256 aa24.1■■□□□ 1.45
CLN3-239ENST00000628023 FHDC1Q9C0D6 1143 aaPredicted RBP24.1■■□□□ 1.45
CLN3-239ENST00000628023 TFCP2L1Q9NZI6 479 aa24.1■■□□□ 1.45
CLN3-239ENST00000628023 HMGB2P26583 209 aaKnown RBP24.09■■□□□ 1.45
CLN3-239ENST00000628023 IFNL2Q8IZJ0 200 aa24.09■■□□□ 1.45
CLN3-239ENST00000628023 ARXQ96QS3 562 aa24.09■■□□□ 1.45
CLN3-239ENST00000628023 SYT17Q9BSW7 474 aa24.09■■□□□ 1.45
CLN3-239ENST00000628023 DOT1LQ8TEK3 1739 aa24.09■■□□□ 1.45
CLN3-239ENST00000628023 PRKAR2BP31323 418 aa24.08■■□□□ 1.45
CLN3-239ENST00000628023 C1orf141Q5JVX7 400 aa24.08■■□□□ 1.45
CLN3-239ENST00000628023 SGIP1Q9BQI5 828 aa24.08■■□□□ 1.45
CLN3-239ENST00000628023 PHKG2P15735 406 aa24.07■■□□□ 1.44
CLN3-239ENST00000628023 RSPH6AQ9H0K4 717 aa24.07■■□□□ 1.44
CLN3-239ENST00000628023 CCNL1Q9UK58 526 aaPredicted RBP24.07■■□□□ 1.44
CLN3-239ENST00000628023 WDR43Q15061 677 aaKnown RBP eCLIP24.06■■□□□ 1.44
CLN3-239ENST00000628023 FCHSD2O94868 740 aa24.05■■□□□ 1.44
CLN3-239ENST00000628023 NEFMP07197 916 aa24.05■■□□□ 1.44
CLN3-239ENST00000628023 POLD1P28340 1107 aa24.05■■□□□ 1.44
CLN3-239ENST00000628023 KCNQ4P56696 695 aa24.05■■□□□ 1.44
CLN3-239ENST00000628023 HSP90AB1P08238 724 aaKnown RBP24.04■■□□□ 1.44
CLN3-239ENST00000628023 GAS2L2Q8NHY3 880 aa24.02■■□□□ 1.44
CLN3-239ENST00000628023 PNPLA7Q6ZV29 1317 aa24.02■■□□□ 1.44
CLN3-239ENST00000628023 NKX1-1Q15270 411 aaPredicted RBP24.01■■□□□ 1.43
CLN3-239ENST00000628023 MTHFSDQ2M296 383 aaKnown RBP24.01■■□□□ 1.43
CLN3-239ENST00000628023 PNNQ9H307 717 aaKnown RBP24.01■■□□□ 1.43
CLN3-239ENST00000628023 LY75O60449 1722 aa24.01■■□□□ 1.43
CLN3-239ENST00000628023 QSER1Q2KHR3 1735 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms