RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 WDR17Q8IZU2 1322 aa12.65□□□□□ -0.38
PDLIM5-223ENST00000627587 TTC21AQ8NDW8 1320 aa12.65□□□□□ -0.38
PDLIM5-223ENST00000627587 BCL9O00512 1426 aa12.65□□□□□ -0.38
PDLIM5-223ENST00000627587 POLKQ9UBT6 870 aa12.65□□□□□ -0.38
PDLIM5-223ENST00000627587 WDR43Q15061 677 aaKnown RBP eCLIP12.64□□□□□ -0.39
PDLIM5-223ENST00000627587 ARHGEF25Q86VW2 580 aa12.64□□□□□ -0.39
PDLIM5-223ENST00000627587 CARD10Q9BWT7 1032 aa12.64□□□□□ -0.39
PDLIM5-223ENST00000627587 GTF3C3Q9Y5Q9 886 aa12.64□□□□□ -0.39
PDLIM5-223ENST00000627587 RGPD3A6NKT7 1758 aaPredicted RBP12.64□□□□□ -0.39
PDLIM5-223ENST00000627587 RGPD4Q7Z3J3 1758 aa12.64□□□□□ -0.39
PDLIM5-223ENST00000627587 USP31Q70CQ4 1352 aa12.64□□□□□ -0.39
PDLIM5-223ENST00000627587 EXOC5O00471 708 aa12.63□□□□□ -0.39
PDLIM5-223ENST00000627587 COL18A1P39060 1754 aa12.62□□□□□ -0.39
PDLIM5-223ENST00000627587 CSB-PGBD3P0DP91 1061 aa12.62□□□□□ -0.39
PDLIM5-223ENST00000627587 COG3Q96JB2 828 aa12.62□□□□□ -0.39
PDLIM5-223ENST00000627587 AXIN2Q9Y2T1 843 aa12.62□□□□□ -0.39
PDLIM5-223ENST00000627587 YY1P25490 414 aa12.61□□□□□ -0.39
PDLIM5-223ENST00000627587 EMILIN1Q9Y6C2 1016 aa12.61□□□□□ -0.39
PDLIM5-223ENST00000627587 U3KPZ7 1027 aaPredicted RBP12.61□□□□□ -0.39
PDLIM5-223ENST00000627587 SBF2Q86WG5 1849 aa12.61□□□□□ -0.39
PDLIM5-223ENST00000627587 CCDC146Q8IYE0 955 aa12.61□□□□□ -0.39
PDLIM5-223ENST00000627587 MARCH10Q8NA82 808 aaPredicted RBP12.61□□□□□ -0.39
PDLIM5-223ENST00000627587 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
PDLIM5-223ENST00000627587 ZNF521Q96K83 1311 aa12.6□□□□□ -0.39
PDLIM5-223ENST00000627587 LRRC37A3O60309 1634 aa12.6□□□□□ -0.39
PDLIM5-223ENST00000627587 RRS1Q15050 365 aaKnown RBP12.59□□□□□ -0.39
PDLIM5-223ENST00000627587 ABCC6O95255 1503 aa12.59□□□□□ -0.39
PDLIM5-223ENST00000627587 STK32BQ9NY57 414 aa12.59□□□□□ -0.39
PDLIM5-223ENST00000627587 SALL2Q9Y467 1007 aaPredicted RBP12.59□□□□□ -0.39
PDLIM5-223ENST00000627587 LTN1O94822 1766 aa12.58□□□□□ -0.4
PDLIM5-223ENST00000627587 PROM2Q8N271 834 aa12.58□□□□□ -0.4
PDLIM5-223ENST00000627587 APAF1O14727 1248 aa12.57□□□□□ -0.4
PDLIM5-223ENST00000627587 TXNRD1Q16881 649 aa12.57□□□□□ -0.4
PDLIM5-223ENST00000627587 WNK3Q9BYP7 1800 aa12.57□□□□□ -0.4
PDLIM5-223ENST00000627587 NFAT5O94916 1531 aa12.56□□□□□ -0.4
PDLIM5-223ENST00000627587 SLC15A2Q16348 729 aa12.56□□□□□ -0.4
PDLIM5-223ENST00000627587 CDCA7LQ96GN5 454 aa12.56□□□□□ -0.4
PDLIM5-223ENST00000627587 PLEKHF1Q96S99 279 aa12.56□□□□□ -0.4
PDLIM5-223ENST00000627587 DIAPH1O60610 1272 aaKnown RBP12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 IL13P35225 146 aa12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 ANO8Q9HCE9 1232 aaPredicted RBP12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 NUDCQ9Y266 331 aa12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 RGPD5Q99666 1765 aa12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 PPM1GO15355 546 aaPredicted RBP12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 SOX12O15370 315 aa12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 U2AF1L5P0DN76 240 aaPredicted RBP12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 U2AF1Q01081 240 aaKnown RBP eCLIP12.55□□□□□ -0.41e-7■■■■■ 28.2
PDLIM5-223ENST00000627587 PTF1AQ7RTS3 328 aa12.55□□□□□ -0.4
PDLIM5-223ENST00000627587 CASZ1Q86V15 1759 aa12.54□□□□□ -0.4
PDLIM5-223ENST00000627587 RUNDC1Q96C34 613 aa12.54□□□□□ -0.4
PDLIM5-223ENST00000627587 MAP3K19Q56UN5 1328 aa12.54□□□□□ -0.4
PDLIM5-223ENST00000627587 IL2RBP14784 551 aa12.53□□□□□ -0.4
PDLIM5-223ENST00000627587 MTFR1LQ9H019 292 aa12.53□□□□□ -0.4
PDLIM5-223ENST00000627587 DLG5Q8TDM6 1919 aa12.53□□□□□ -0.4
PDLIM5-223ENST00000627587 TNS2Q63HR2 1409 aa12.53□□□□□ -0.4
PDLIM5-223ENST00000627587 U2SURPO15042 1029 aaKnown RBP12.53□□□□□ -0.4
PDLIM5-223ENST00000627587 NLRP2Q9NX02 1062 aa12.53□□□□□ -0.4
PDLIM5-223ENST00000627587 ZBTB7AO95365 584 aa12.52□□□□□ -0.41
PDLIM5-223ENST00000627587 PTGER2P43116 358 aa12.52□□□□□ -0.41
PDLIM5-223ENST00000627587 RSPH6AQ9H0K4 717 aa12.52□□□□□ -0.41
PDLIM5-223ENST00000627587 SUPT16HQ9Y5B9 1047 aaKnown RBP12.52□□□□□ -0.41
PDLIM5-223ENST00000627587 ERBB3P21860 1342 aa12.52□□□□□ -0.41
PDLIM5-223ENST00000627587 HSP90AB2PQ58FF8 381 aa12.51□□□□□ -0.41
PDLIM5-223ENST00000627587 SPINK5Q9NQ38 1064 aaPredicted RBP12.51□□□□□ -0.41
PDLIM5-223ENST00000627587 ATF5Q9Y2D1 282 aaPredicted RBP12.51□□□□□ -0.41
PDLIM5-223ENST00000627587 EIF4A2Q14240 407 aaKnown RBP12.51□□□□□ -0.41
PDLIM5-223ENST00000627587 DSG3P32926 999 aa12.5□□□□□ -0.41
PDLIM5-223ENST00000627587 WWC1Q8IX03 1113 aa12.5□□□□□ -0.41
PDLIM5-223ENST00000627587 TRMT2AQ8IZ69 625 aaKnown RBP12.5□□□□□ -0.41
PDLIM5-223ENST00000627587 ANKRD24Q8TF21 1146 aa12.5□□□□□ -0.41
PDLIM5-223ENST00000627587 RRP7AQ9Y3A4 280 aaKnown RBP12.5□□□□□ -0.41
PDLIM5-223ENST00000627587 FLT4P35916 1363 aa12.5□□□□□ -0.41
PDLIM5-223ENST00000627587 NGEFQ8N5V2 710 aa12.49□□□□□ -0.41
PDLIM5-223ENST00000627587 SYT17Q9BSW7 474 aa12.49□□□□□ -0.41
PDLIM5-223ENST00000627587 PDGFDQ9GZP0 370 aaPredicted RBP12.49□□□□□ -0.41
PDLIM5-223ENST00000627587 NHSQ6T4R5 1651 aa12.49□□□□□ -0.41
PDLIM5-223ENST00000627587 RGPD2P0DJD1 1756 aa12.49□□□□□ -0.41
PDLIM5-223ENST00000627587 FCHSD2O94868 740 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 DUSP27Q5VZP5 1158 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 RNF123Q5XPI4 1314 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 IP6K1Q92551 441 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 KIF24Q5T7B8 1368 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 HMOX1P09601 288 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 SLFN5Q08AF3 891 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 SLC16A10Q8TF71 515 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 ACSBG1Q96GR2 724 aa12.48□□□□□ -0.41
PDLIM5-223ENST00000627587 HMGB2P26583 209 aaKnown RBP12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 PRKAR2BP31323 418 aa12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 GOLGA2Q08379 1002 aa12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 CCDC27Q2M243 656 aa12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 SLC27A3Q5K4L6 730 aa12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 PHACTR3Q96KR7 559 aa12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 ARXQ96QS3 562 aa12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 SGIP1Q9BQI5 828 aa12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 FHDC1Q9C0D6 1143 aaPredicted RBP12.47□□□□□ -0.41
PDLIM5-223ENST00000627587 HOXC9P31274 260 aa12.46□□□□□ -0.41
PDLIM5-223ENST00000627587 TMPOP42166 694 aaKnown RBP12.46□□□□□ -0.41
PDLIM5-223ENST00000627587 NEUROD2Q15784 382 aa12.46□□□□□ -0.41
PDLIM5-223ENST00000627587 TRIM35Q9UPQ4 493 aa12.46□□□□□ -0.41
PDLIM5-223ENST00000627587 MAP3K5Q99683 1374 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms