RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 TMEM57Q8N5G2 664 aa28.11■■■□□ 2.09
PNKP-220ENST00000627232 ALS2Q96Q42 1657 aa28.1■■■□□ 2.09
PNKP-220ENST00000627232 KRT28Q7Z3Y7 464 aa28.1■■■□□ 2.09
PNKP-220ENST00000627232 ATF3P18847 181 aa28.08■■■□□ 2.09
PNKP-220ENST00000627232 CHMP4BQ9H444 224 aaKnown RBP28.08■■■□□ 2.09
PNKP-220ENST00000627232 ELL2O00472 640 aaPredicted RBP28.06■■■□□ 2.08
PNKP-220ENST00000627232 LTV1Q96GA3 475 aaPredicted RBP28.06■■■□□ 2.08
PNKP-220ENST00000627232 GCP02774 474 aa28.05■■■□□ 2.08
PNKP-220ENST00000627232 ARHGEF25Q86VW2 580 aa28.05■■■□□ 2.08
PNKP-220ENST00000627232 ZBTB40Q9NUA8 1239 aa28.05■■■□□ 2.08
PNKP-220ENST00000627232 GNAT3A8MTJ3 354 aa28.04■■■□□ 2.08
PNKP-220ENST00000627232 API5Q9BZZ5 524 aaKnown RBP28.04■■■□□ 2.08
PNKP-220ENST00000627232 MAP3K5Q99683 1374 aa28.03■■■□□ 2.08
PNKP-220ENST00000627232 ANP32AP39687 249 aaKnown RBP28.03■■■□□ 2.08
PNKP-220ENST00000627232 HDAC1Q13547 482 aaPredicted RBP28.03■■■□□ 2.08
PNKP-220ENST00000627232 ABCC4O15439 1325 aa28.03■■■□□ 2.08
PNKP-220ENST00000627232 RGPD2P0DJD1 1756 aa28.03■■■□□ 2.08
PNKP-220ENST00000627232 XPCQ01831 940 aaPredicted RBP28.02■■■□□ 2.08
PNKP-220ENST00000627232 MSH6P52701 1360 aa28.02■■■□□ 2.08
PNKP-220ENST00000627232 RGS3P49796 1198 aa28.02■■■□□ 2.08
PNKP-220ENST00000627232 FAM161AQ3B820 660 aa28.02■■■□□ 2.08
PNKP-220ENST00000627232 NCAPD2Q15021 1401 aa28.01■■■□□ 2.08
PNKP-220ENST00000627232 CAMTA1Q9Y6Y1 1673 aa28.01■■■□□ 2.08
PNKP-220ENST00000627232 HSPA2P54652 639 aa28.01■■■□□ 2.07
PNKP-220ENST00000627232 CADPS2Q86UW7 1296 aa28.01■■■□□ 2.07
PNKP-220ENST00000627232 BABAM1Q9NWV8 329 aa28.01■■■□□ 2.07
PNKP-220ENST00000627232 VIRMAQ69YN4 1812 aaKnown RBP28.01■■■□□ 2.07
PNKP-220ENST00000627232 STRCQ7RTU9 1775 aa28■■■□□ 2.07
PNKP-220ENST00000627232 XIRP1Q702N8 1843 aaKnown RBP28■■■□□ 2.07
PNKP-220ENST00000627232 LMTK3Q96Q04 1460 aa28■■■□□ 2.07
PNKP-220ENST00000627232 MSH5O43196 834 aa27.99■■■□□ 2.07
PNKP-220ENST00000627232 NBPF6Q5VWK0 638 aa27.98■■■□□ 2.07
PNKP-220ENST00000627232 NBPF4Q96M43 638 aa27.98■■■□□ 2.07
PNKP-220ENST00000627232 TSPYL4Q9UJ04 414 aa27.98■■■□□ 2.07
PNKP-220ENST00000627232 LMO7Q8WWI1 1683 aa27.96■■■□□ 2.07
PNKP-220ENST00000627232 MED1Q15648 1581 aaPredicted RBP27.96■■■□□ 2.07
PNKP-220ENST00000627232 LMOD2Q6P5Q4 547 aa27.96■■■□□ 2.07
PNKP-220ENST00000627232 PDZRN3Q9UPQ7 1066 aa27.96■■■□□ 2.07
PNKP-220ENST00000627232 SOS1Q07889 1333 aaPredicted RBP27.96■■■□□ 2.07
PNKP-220ENST00000627232 ZBTB7BO15156 539 aaPredicted RBP27.95■■■□□ 2.06
PNKP-220ENST00000627232 C8orf34Q49A92 452 aa27.95■■■□□ 2.06
PNKP-220ENST00000627232 USHBP1Q8N6Y0 703 aa27.95■■■□□ 2.06
PNKP-220ENST00000627232 KRT24Q2M2I5 525 aa27.94■■■□□ 2.06
PNKP-220ENST00000627232 PTPRCP08575 1304 aa27.94■■■□□ 2.06
PNKP-220ENST00000627232 NPHP3Q7Z494 1330 aa27.94■■■□□ 2.06
PNKP-220ENST00000627232 KDM4FA0A1W2PPD8 638 aa27.93■■■□□ 2.06
PNKP-220ENST00000627232 ZBTB7CA1YPR0 619 aa27.93■■■□□ 2.06
PNKP-220ENST00000627232 IL17REQ8NFR9 667 aa27.92■■■□□ 2.06
PNKP-220ENST00000627232 CACNA1FO60840 1977 aa27.92■■■□□ 2.06
PNKP-220ENST00000627232 RGPD5Q99666 1765 aa27.91■■■□□ 2.06
PNKP-220ENST00000627232 CEMIPQ8WUJ3 1361 aa27.91■■■□□ 2.06
PNKP-220ENST00000627232 TAF7Q15545 349 aaPredicted RBP27.91■■■□□ 2.06
PNKP-220ENST00000627232 SMC5Q8IY18 1101 aa27.91■■■□□ 2.06
PNKP-220ENST00000627232 IPO9Q96P70 1041 aaKnown RBP27.91■■■□□ 2.06
PNKP-220ENST00000627232 MIS18AQ9NYP9 233 aa27.91■■■□□ 2.06
PNKP-220ENST00000627232 ANKRD24Q8TF21 1146 aa27.9■■■□□ 2.06
PNKP-220ENST00000627232 ABCC6O95255 1503 aa27.9■■■□□ 2.06
PNKP-220ENST00000627232 RGS12O14924 1447 aa27.9■■■□□ 2.06
PNKP-220ENST00000627232 TNS3Q68CZ2 1445 aa27.9■■■□□ 2.06
PNKP-220ENST00000627232 INTS3Q68E01 1043 aaKnown RBP27.89■■■□□ 2.06
PNKP-220ENST00000627232 PXDNQ92626 1479 aa27.89■■■□□ 2.06
PNKP-220ENST00000627232 AMOTQ4VCS5 1084 aa27.88■■■□□ 2.05
PNKP-220ENST00000627232 PLEKHO1Q53GL0 409 aaPredicted RBP27.88■■■□□ 2.05
PNKP-220ENST00000627232 CRYBG1Q9Y4K1 1723 aa27.88■■■□□ 2.05
PNKP-220ENST00000627232 FAM208AQ9UK61 1670 aaKnown RBP27.88■■■□□ 2.05
PNKP-220ENST00000627232 LRRC59Q96AG4 307 aaKnown RBP27.87■■■□□ 2.05
PNKP-220ENST00000627232 COL18A1P39060 1754 aa27.86■■■□□ 2.05
PNKP-220ENST00000627232 KDM3BQ7LBC6 1761 aa27.85■■■□□ 2.05
PNKP-220ENST00000627232 OVOS2A0A0G2JMS6 1433 aa27.85■■■□□ 2.05
PNKP-220ENST00000627232 AKAP4Q5JQC9 854 aa27.85■■■□□ 2.05
PNKP-220ENST00000627232 SLC4A2P04920 1241 aa27.82■■■□□ 2.04
PNKP-220ENST00000627232 AXIN2Q9Y2T1 843 aa27.82■■■□□ 2.04
PNKP-220ENST00000627232 NPM2Q86SE8 214 aaKnown RBP27.82■■■□□ 2.04
PNKP-220ENST00000627232 ERBB3P21860 1342 aa27.81■■■□□ 2.04
PNKP-220ENST00000627232 SPATA31A3Q5VYP0 1347 aa27.81■■■□□ 2.04
PNKP-220ENST00000627232 CCDC30Q5VVM6 783 aa27.81■■■□□ 2.04
PNKP-220ENST00000627232 ZNF530Q6P9A1 599 aaPredicted RBP27.81■■■□□ 2.04
PNKP-220ENST00000627232 DDX17Q92841 729 aaKnown RBP27.8■■■□□ 2.04
PNKP-220ENST00000627232 GCC1Q96CN9 775 aa27.8■■■□□ 2.04
PNKP-220ENST00000627232 STK31Q9BXU1 1019 aa27.8■■■□□ 2.04
PNKP-220ENST00000627232 ERICH6Q7L0X2 663 aa27.79■■■□□ 2.04
PNKP-220ENST00000627232 NOP58Q9Y2X3 529 aaKnown RBP27.79■■■□□ 2.04
PNKP-220ENST00000627232 PLEKHG2Q9H7P9 1386 aa27.79■■■□□ 2.04
PNKP-220ENST00000627232 PLEKHG5O94827 1062 aa27.78■■■□□ 2.04
PNKP-220ENST00000627232 ZC3H6P61129 1189 aaKnown RBP27.78■■■□□ 2.04
PNKP-220ENST00000627232 ADAMTS7Q9UKP4 1686 aa27.78■■■□□ 2.04
PNKP-220ENST00000627232 NUCB1Q02818 461 aa27.77■■■□□ 2.04
PNKP-220ENST00000627232 ANP32EQ9BTT0 268 aa27.77■■■□□ 2.04
PNKP-220ENST00000627232 N4BP2Q86UW6 1770 aaPredicted RBP27.77■■■□□ 2.04
PNKP-220ENST00000627232 C1orf141Q5JVX7 400 aa27.76■■■□□ 2.03
PNKP-220ENST00000627232 CHMP4AQ9BY43 222 aa27.76■■■□□ 2.03
PNKP-220ENST00000627232 CPDO75976 1380 aa27.75■■■□□ 2.03
PNKP-220ENST00000627232 HOXB7P09629 217 aa27.75■■■□□ 2.03
PNKP-220ENST00000627232 BRINP3Q76B58 766 aa27.75■■■□□ 2.03
PNKP-220ENST00000627232 DDRGK1Q96HY6 314 aa27.75■■■□□ 2.03
PNKP-220ENST00000627232 LGR6Q9HBX8 967 aa27.75■■■□□ 2.03
PNKP-220ENST00000627232 ZBTB47Q9UFB7 747 aaPredicted RBP27.74■■■□□ 2.03
PNKP-220ENST00000627232 SIPA1L3O60292 1781 aaPredicted RBP27.74■■■□□ 2.03
PNKP-220ENST00000627232 RNMTO43148 476 aaKnown RBP27.73■■■□□ 2.03
PNKP-220ENST00000627232 CCT4P50991 539 aaKnown RBP27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms