RNA–Protein interactions for RNA: ENST00000626631.1

TCF4-256, Transcript of transcription factor 4, human

TSL 2

Gene TCF4, Length 622 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-256	ENST00000626631	NEUROD1	Q13562	356 aa		11.25	□□□□□ -0.61
TCF4-256	ENST00000626631	SLC15A2	Q16348	729 aa		11.25	□□□□□ -0.61
TCF4-256	ENST00000626631	ABCC6	O95255	1503 aa		11.25	□□□□□ -0.61
TCF4-256	ENST00000626631	SGIP1	Q9BQI5	828 aa		11.24	□□□□□ -0.61
TCF4-256	ENST00000626631	GOLGB1	Q14789	3259 aa	Known RBP	11.24	□□□□□ -0.61
TCF4-256	ENST00000626631	SBNO2	Q9Y2G9	1366 aa		11.24	□□□□□ -0.61
TCF4-256	ENST00000626631	CD163L1	Q9NR16	1453 aa		11.24	□□□□□ -0.61
TCF4-256	ENST00000626631	NME9	Q86XW9	330 aa		11.23	□□□□□ -0.61
TCF4-256	ENST00000626631	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.23	□□□□□ -0.61
TCF4-256	ENST00000626631	STK32B	Q9NY57	414 aa		11.23	□□□□□ -0.61
TCF4-256	ENST00000626631	ERBB3	P21860	1342 aa		11.23	□□□□□ -0.61
TCF4-256	ENST00000626631	TNS2	Q63HR2	1409 aa		11.23	□□□□□ -0.61
TCF4-256	ENST00000626631	SLC12A5	Q9H2X9	1139 aa		11.22	□□□□□ -0.61
TCF4-256	ENST00000626631	MON2	Q7Z3U7	1717 aa		11.21	□□□□□ -0.61
TCF4-256	ENST00000626631	IL2RB	P14784	551 aa		11.21	□□□□□ -0.61
TCF4-256	ENST00000626631	ACSBG1	Q96GR2	724 aa		11.21	□□□□□ -0.61
TCF4-256	ENST00000626631	PUS7	Q96PZ0	661 aa	Known RBP	11.21	□□□□□ -0.61
TCF4-256	ENST00000626631	SYT17	Q9BSW7	474 aa		11.21	□□□□□ -0.61
TCF4-256	ENST00000626631	MTFR1L	Q9H019	292 aa		11.21	□□□□□ -0.61
TCF4-256	ENST00000626631	NLRP2	Q9NX02	1062 aa		11.21	□□□□□ -0.61
TCF4-256	ENST00000626631	USP54	Q70EL1	1684 aa		11.2	□□□□□ -0.62
TCF4-256	ENST00000626631	ANKRD24	Q8TF21	1146 aa		11.2	□□□□□ -0.62
TCF4-256	ENST00000626631	CARD11	Q9BXL7	1154 aa		11.2	□□□□□ -0.62
TCF4-256	ENST00000626631	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.19	□□□□□ -0.62
TCF4-256	ENST00000626631	ZNF579	Q8NAF0	562 aa	Known RBP	11.19	□□□□□ -0.62
TCF4-256	ENST00000626631	TMC1	Q8TDI8	760 aa		11.19	□□□□□ -0.62
TCF4-256	ENST00000626631	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.19	□□□□□ -0.62
TCF4-256	ENST00000626631	LRRC4B	Q9NT99	713 aa		11.19	□□□□□ -0.62
TCF4-256	ENST00000626631	EDC4	Q6P2E9	1401 aa	Known RBP	11.18	□□□□□ -0.62
TCF4-256	ENST00000626631	MYOM1	P52179	1685 aa		11.18	□□□□□ -0.62
TCF4-256	ENST00000626631	NHS	Q6T4R5	1651 aa		11.18	□□□□□ -0.62
TCF4-256	ENST00000626631	IP6K1	Q92551	441 aa		11.18	□□□□□ -0.62
TCF4-256	ENST00000626631	ZNF827	Q17R98	1081 aa		11.17	□□□□□ -0.62
TCF4-256	ENST00000626631	TERF2IP	Q9NYB0	399 aa		11.17	□□□□□ -0.62
TCF4-256	ENST00000626631	PAPPA	Q13219	1627 aa		11.17	□□□□□ -0.62
TCF4-256	ENST00000626631		A0A1W2PP64	1363 aa		11.16	□□□□□ -0.62
TCF4-256	ENST00000626631	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.16	□□□□□ -0.62
TCF4-256	ENST00000626631	ARX	Q96QS3	562 aa		11.16	□□□□□ -0.62
TCF4-256	ENST00000626631	LTN1	O94822	1766 aa		11.16	□□□□□ -0.62
TCF4-256	ENST00000626631	MAP3K5	Q99683	1374 aa		11.16	□□□□□ -0.62
TCF4-256	ENST00000626631	TESK2	Q96S53	571 aa		11.15	□□□□□ -0.62
TCF4-256	ENST00000626631	PCDH10	Q9P2E7	1040 aa		11.15	□□□□□ -0.62
TCF4-256	ENST00000626631	BTAF1	O14981	1849 aa		11.14	□□□□□ -0.63
TCF4-256	ENST00000626631	POTEB2	H3BUK9	544 aa		11.14	□□□□□ -0.63
TCF4-256	ENST00000626631	SLC27A3	Q5K4L6	730 aa		11.14	□□□□□ -0.63
TCF4-256	ENST00000626631	DDX54	Q8TDD1	881 aa	Known RBP	11.14	□□□□□ -0.63
TCF4-256	ENST00000626631	SLC16A10	Q8TF71	515 aa		11.14	□□□□□ -0.63
TCF4-256	ENST00000626631	CEP350	Q5VT06	3117 aa		11.13	□□□□□ -0.63
TCF4-256	ENST00000626631	FBLN1	P23142	703 aa		11.13	□□□□□ -0.63
TCF4-256	ENST00000626631	HOXC9	P31274	260 aa		11.13	□□□□□ -0.63
TCF4-256	ENST00000626631	KAT6B	Q8WYB5	2073 aa		11.13	□□□□□ -0.63
TCF4-256	ENST00000626631	MAP3K19	Q56UN5	1328 aa		11.12	□□□□□ -0.63
TCF4-256	ENST00000626631	ST20-MTHFS	A0A0A6YYL1	179 aa		11.12	□□□□□ -0.63
TCF4-256	ENST00000626631	GALR2	O43603	387 aa	Predicted RBP	11.12	□□□□□ -0.63
TCF4-256	ENST00000626631	PRIM1	P49642	420 aa	Known RBP	11.12	□□□□□ -0.63
TCF4-256	ENST00000626631	LTV1	Q96GA3	475 aa	Predicted RBP	11.12	□□□□□ -0.63
TCF4-256	ENST00000626631	PNPLA7	Q6ZV29	1317 aa		11.11	□□□□□ -0.63
TCF4-256	ENST00000626631	ZCRB1	Q8TBF4	217 aa	Known RBP	11.11	□□□□□ -0.63
TCF4-256	ENST00000626631	COG3	Q96JB2	828 aa		11.11	□□□□□ -0.63
TCF4-256	ENST00000626631	NSD2	O96028	1365 aa		11.11	□□□□□ -0.63
TCF4-256	ENST00000626631	SLC24A1	O60721	1099 aa		11.1	□□□□□ -0.63
TCF4-256	ENST00000626631	KCNQ4	P56696	695 aa		11.1	□□□□□ -0.63
TCF4-256	ENST00000626631	ANKRD36B	Q8N2N9	1353 aa		11.1	□□□□□ -0.63
TCF4-256	ENST00000626631	COL24A1	Q17RW2	1714 aa		11.09	□□□□□ -0.63
TCF4-256	ENST00000626631	FYB1	O15117	783 aa		11.09	□□□□□ -0.63
TCF4-256	ENST00000626631	AMPH	P49418	695 aa		11.09	□□□□□ -0.63
TCF4-256	ENST00000626631	NBPF6	Q5VWK0	638 aa		11.09	□□□□□ -0.63
TCF4-256	ENST00000626631	NBPF4	Q96M43	638 aa		11.09	□□□□□ -0.63
TCF4-256	ENST00000626631	TFCP2L1	Q9NZI6	479 aa		11.09	□□□□□ -0.63
TCF4-256	ENST00000626631	FAM208A	Q9UK61	1670 aa	Known RBP	11.08	□□□□□ -0.64
TCF4-256	ENST00000626631	CHD4	Q14839	1912 aa		11.08	□□□□□ -0.64
TCF4-256	ENST00000626631	TONSL	Q96HA7	1378 aa		11.08	□□□□□ -0.64
TCF4-256	ENST00000626631	POLD1	P28340	1107 aa		11.08	□□□□□ -0.64
TCF4-256	ENST00000626631	SYTL4	Q96C24	671 aa	Predicted RBP	11.08	□□□□□ -0.64
TCF4-256	ENST00000626631	QSER1	Q2KHR3	1735 aa		11.08	□□□□□ -0.64
TCF4-256	ENST00000626631	RRS1	Q15050	365 aa	Known RBP	11.07	□□□□□ -0.64
TCF4-256	ENST00000626631	GPR162	Q16538	588 aa		11.07	□□□□□ -0.64
TCF4-256	ENST00000626631	MEGF6	O75095	1541 aa		11.07	□□□□□ -0.64
TCF4-256	ENST00000626631	CGNL1	Q0VF96	1302 aa		11.07	□□□□□ -0.64
TCF4-256	ENST00000626631	RTL1	A6NKG5	1358 aa		11.06	□□□□□ -0.64
TCF4-256	ENST00000626631	C1QTNF8	P60827	252 aa		11.06	□□□□□ -0.64
TCF4-256	ENST00000626631	CCNL1	Q9UK58	526 aa	Predicted RBP	11.06	□□□□□ -0.64
TCF4-256	ENST00000626631	LY75	O60449	1722 aa		11.06	□□□□□ -0.64
TCF4-256	ENST00000626631	SHANK3	Q9BYB0	1731 aa		11.06	□□□□□ -0.64
TCF4-256	ENST00000626631	RGPD2	P0DJD1	1756 aa		11.05	□□□□□ -0.64
TCF4-256	ENST00000626631	COL23A1	Q86Y22	540 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-256	ENST00000626631	USHBP1	Q8N6Y0	703 aa		11.05	□□□□□ -0.64
TCF4-256	ENST00000626631	NLGN2	Q8NFZ4	835 aa		11.05	□□□□□ -0.64
TCF4-256	ENST00000626631	GGNBP2	Q9H3C7	697 aa		11.05	□□□□□ -0.64
TCF4-256	ENST00000626631	TUBGCP6	Q96RT7	1819 aa		11.05	□□□□□ -0.64
TCF4-256	ENST00000626631	HSP90AB2P	Q58FF8	381 aa		11.04	□□□□□ -0.64
TCF4-256	ENST00000626631	DOT1L	Q8TEK3	1739 aa		11.04	□□□□□ -0.64
TCF4-256	ENST00000626631	USP47	Q96K76	1375 aa		11.03	□□□□□ -0.64
TCF4-256	ENST00000626631	RAPGEF4	Q8WZA2	1011 aa		11.03	□□□□□ -0.64
TCF4-256	ENST00000626631	INSR	P06213	1382 aa		11.03	□□□□□ -0.64
TCF4-256	ENST00000626631	CYP27B1	O15528	508 aa		11.02	□□□□□ -0.65
TCF4-256	ENST00000626631	YBX3	P16989	372 aa	Known RBP eCLIP	11.02	□□□□□ -0.65
TCF4-256	ENST00000626631	TAT	P17735	454 aa	Predicted RBP	11.02	□□□□□ -0.65
TCF4-256	ENST00000626631	TMF1	P82094	1093 aa		11.02	□□□□□ -0.65
TCF4-256	ENST00000626631	KLHL34	Q8N239	644 aa		11.02	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms