RNA–Protein interactions for RNA: ENST00000625275.2

R3HCC1-210, Transcript of R3H domain and coiled-coil containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene R3HCC1, Length 1,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-210ENST00000625275 ZNF316A6NFI3 1004 aaPredicted RBP27.41■■□□□ 1.98
R3HCC1-210ENST00000625275 INSRP06213 1382 aa27.4■■□□□ 1.98
R3HCC1-210ENST00000625275 DDX54Q8TDD1 881 aaKnown RBP27.4■■□□□ 1.98
R3HCC1-210ENST00000625275 SPON1Q9HCB6 807 aa27.39■■□□□ 1.98
R3HCC1-210ENST00000625275 LY75O60449 1722 aa27.39■■□□□ 1.98
R3HCC1-210ENST00000625275 NBPF6Q5VWK0 638 aa27.38■■□□□ 1.97
R3HCC1-210ENST00000625275 NBPF4Q96M43 638 aa27.38■■□□□ 1.97
R3HCC1-210ENST00000625275 QSER1Q2KHR3 1735 aa27.37■■□□□ 1.97
R3HCC1-210ENST00000625275 STK32BQ9NY57 414 aa27.37■■□□□ 1.97
R3HCC1-210ENST00000625275 HSP90AB2PQ58FF8 381 aa27.36■■□□□ 1.97
R3HCC1-210ENST00000625275 PKD1L3Q7Z443 1732 aa27.36■■□□□ 1.97
R3HCC1-210ENST00000625275 USHBP1Q8N6Y0 703 aa27.35■■□□□ 1.97
R3HCC1-210ENST00000625275 ZCRB1Q8TBF4 217 aaKnown RBP27.35■■□□□ 1.97
R3HCC1-210ENST00000625275 CGNL1Q0VF96 1302 aa27.35■■□□□ 1.97
R3HCC1-210ENST00000625275 TUBGCP6Q96RT7 1819 aa27.34■■□□□ 1.97
R3HCC1-210ENST00000625275 SLC15A2Q16348 729 aa27.33■■□□□ 1.97
R3HCC1-210ENST00000625275 EMILIN1Q9Y6C2 1016 aa27.32■■□□□ 1.96
R3HCC1-210ENST00000625275 RAPGEF4Q8WZA2 1011 aa27.32■■□□□ 1.96
R3HCC1-210ENST00000625275 PDGFDQ9GZP0 370 aaPredicted RBP27.32■■□□□ 1.96
R3HCC1-210ENST00000625275 PPP1R1BQ9UD71 204 aaPredicted RBP27.32■■□□□ 1.96
R3HCC1-210ENST00000625275 ITGB4P16144 1822 aa27.31■■□□□ 1.96
R3HCC1-210ENST00000625275 NSD2O96028 1365 aa27.28■■□□□ 1.96
R3HCC1-210ENST00000625275 TOGARAM1Q9Y4F4 1720 aa27.28■■□□□ 1.96
R3HCC1-210ENST00000625275 TATP17735 454 aaPredicted RBP27.28■■□□□ 1.96
R3HCC1-210ENST00000625275 SYTL4Q96C24 671 aaPredicted RBP27.28■■□□□ 1.96
R3HCC1-210ENST00000625275 NCAPD2Q15021 1401 aa27.28■■□□□ 1.96
R3HCC1-210ENST00000625275 PANK3Q9H999 370 aa27.27■■□□□ 1.96
R3HCC1-210ENST00000625275 ZBTB7AO95365 584 aa27.26■■□□□ 1.95
R3HCC1-210ENST00000625275 PRIM1P49642 420 aaKnown RBP27.26■■□□□ 1.95
R3HCC1-210ENST00000625275 PPM1GO15355 546 aaPredicted RBP27.25■■□□□ 1.95
R3HCC1-210ENST00000625275 LRRC4BQ9NT99 713 aa27.25■■□□□ 1.95
R3HCC1-210ENST00000625275 PCDH11XQ9BZA7 1347 aa27.24■■□□□ 1.95
R3HCC1-210ENST00000625275 PCDH11YQ9BZA8 1340 aa27.24■■□□□ 1.95
R3HCC1-210ENST00000625275 SLC27A3Q5K4L6 730 aa27.24■■□□□ 1.95
R3HCC1-210ENST00000625275 TAF1LQ8IZX4 1826 aa27.24■■□□□ 1.95
R3HCC1-210ENST00000625275 C5P01031 1676 aa27.22■■□□□ 1.95
R3HCC1-210ENST00000625275 ZNF827Q17R98 1081 aa27.22■■□□□ 1.95
R3HCC1-210ENST00000625275 DDX10Q13206 875 aaKnown RBP27.21■■□□□ 1.95
R3HCC1-210ENST00000625275 COL24A1Q17RW2 1714 aa27.2■■□□□ 1.95
R3HCC1-210ENST00000625275 PTGER2P43116 358 aa27.2■■□□□ 1.95
R3HCC1-210ENST00000625275 POLKQ9UBT6 870 aa27.2■■□□□ 1.95
R3HCC1-210ENST00000625275 MTFR1LQ9H019 292 aa27.19■■□□□ 1.94
R3HCC1-210ENST00000625275 ATF5Q9Y2D1 282 aaPredicted RBP27.19■■□□□ 1.94
R3HCC1-210ENST00000625275 AKT1S1Q96B36 256 aa27.17■■□□□ 1.94
R3HCC1-210ENST00000625275 TNNT2P45379 298 aaPredicted RBP27.16■■□□□ 1.94
R3HCC1-210ENST00000625275 CYP27B1O15528 508 aa27.15■■□□□ 1.94
R3HCC1-210ENST00000625275 PER1O15534 1290 aaPredicted RBP27.15■■□□□ 1.94
R3HCC1-210ENST00000625275 KCNQ4P56696 695 aa27.14■■□□□ 1.94
R3HCC1-210ENST00000625275 EYA1Q99502 592 aa27.14■■□□□ 1.94
R3HCC1-210ENST00000625275 SGIP1Q9BQI5 828 aa27.13■■□□□ 1.93
R3HCC1-210ENST00000625275 CCNL1Q9UK58 526 aaPredicted RBP27.13■■□□□ 1.93
R3HCC1-210ENST00000625275 KNSTRNQ9Y448 316 aa27.12■■□□□ 1.93
R3HCC1-210ENST00000625275 EIF4A2Q14240 407 aaKnown RBP27.11■■□□□ 1.93
R3HCC1-210ENST00000625275 SPG7Q9UQ90 795 aa27.11■■□□□ 1.93
R3HCC1-210ENST00000625275 PNPLA7Q6ZV29 1317 aa27.1■■□□□ 1.93
R3HCC1-210ENST00000625275 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.08■■□□□ 1.93
R3HCC1-210ENST00000625275 TFCP2L1Q9NZI6 479 aa27.08■■□□□ 1.93
R3HCC1-210ENST00000625275 PALLDQ8WX93 1383 aa27.08■■□□□ 1.92
R3HCC1-210ENST00000625275 PLEKHG2Q9H7P9 1386 aa27.08■■□□□ 1.92
R3HCC1-210ENST00000625275 DCAF8L1A6NGE4 600 aa27.07■■□□□ 1.92
R3HCC1-210ENST00000625275 AMER1Q5JTC6 1135 aaPredicted RBP27.07■■□□□ 1.92
R3HCC1-210ENST00000625275 MPRIPQ6WCQ1 1025 aa27.07■■□□□ 1.92
R3HCC1-210ENST00000625275 SLC16A10Q8TF71 515 aa27.07■■□□□ 1.92
R3HCC1-210ENST00000625275 NKX1-1Q15270 411 aaPredicted RBP27.06■■□□□ 1.92
R3HCC1-210ENST00000625275 C4BP0C0L5 1744 aa27.06■■□□□ 1.92
R3HCC1-210ENST00000625275 UBR3Q6ZT12 1888 aa27.06■■□□□ 1.92
R3HCC1-210ENST00000625275 FHDC1Q9C0D6 1143 aaPredicted RBP27.06■■□□□ 1.92
R3HCC1-210ENST00000625275 CHD4Q14839 1912 aa27.05■■□□□ 1.92
R3HCC1-210ENST00000625275 IGSF1Q8N6C5 1336 aa27.05■■□□□ 1.92
R3HCC1-210ENST00000625275 MORC1Q86VD1 984 aa27.05■■□□□ 1.92
R3HCC1-210ENST00000625275 ARXQ96QS3 562 aa27.04■■□□□ 1.92
R3HCC1-210ENST00000625275 SYT17Q9BSW7 474 aa27.02■■□□□ 1.92
R3HCC1-210ENST00000625275 MAP3K5Q99683 1374 aa27.02■■□□□ 1.92
R3HCC1-210ENST00000625275 NPC1L1Q9UHC9 1359 aa27.02■■□□□ 1.92
R3HCC1-210ENST00000625275 SMARCC1Q92922 1105 aaPredicted RBP27.01■■□□□ 1.91
R3HCC1-210ENST00000625275 PHKG2P15735 406 aa27■■□□□ 1.91
R3HCC1-210ENST00000625275 IFNL2Q8IZJ0 200 aa27■■□□□ 1.91
R3HCC1-210ENST00000625275 VIRMAQ69YN4 1812 aaKnown RBP27■■□□□ 1.91
R3HCC1-210ENST00000625275 HMGB2P26583 209 aaKnown RBP27■■□□□ 1.91
R3HCC1-210ENST00000625275 PIGBQ92521 554 aa27■■□□□ 1.91
R3HCC1-210ENST00000625275 CC2D1BQ5T0F9 858 aaKnown RBP26.99■■□□□ 1.91
R3HCC1-210ENST00000625275 POLD1P28340 1107 aa26.98■■□□□ 1.91
R3HCC1-210ENST00000625275 TMOD3Q9NYL9 352 aa26.97■■□□□ 1.91
R3HCC1-210ENST00000625275 CNGB1Q14028 1251 aaPredicted RBP26.96■■□□□ 1.91
R3HCC1-210ENST00000625275 YY1P25490 414 aa26.95■■□□□ 1.91
R3HCC1-210ENST00000625275 COL23A1Q86Y22 540 aaPredicted RBP26.95■■□□□ 1.91
R3HCC1-210ENST00000625275 ZNF831Q5JPB2 1677 aa26.95■■□□□ 1.9
R3HCC1-210ENST00000625275 SCN11AQ9UI33 1791 aa26.94■■□□□ 1.9
R3HCC1-210ENST00000625275 MSH5O43196 834 aa26.93■■□□□ 1.9
R3HCC1-210ENST00000625275 COL5A3P25940 1745 aaPredicted RBP26.92■■□□□ 1.9
R3HCC1-210ENST00000625275 PLEKHO1Q53GL0 409 aaPredicted RBP26.91■■□□□ 1.9
R3HCC1-210ENST00000625275 LOC102724428A0A0B4J2F2 783 aa26.9■■□□□ 1.9
R3HCC1-210ENST00000625275 SIK1P57059 783 aa26.9■■□□□ 1.9
R3HCC1-210ENST00000625275 AEBP1Q8IUX7 1158 aa26.9■■□□□ 1.9
R3HCC1-210ENST00000625275 FLAD1Q8NFF5 587 aa26.9■■□□□ 1.9
R3HCC1-210ENST00000625275 KDRP35968 1356 aa26.9■■□□□ 1.9
R3HCC1-210ENST00000625275 KDM6AO15550 1401 aaPredicted RBP26.89■■□□□ 1.9
R3HCC1-210ENST00000625275 HSP90AB1P08238 724 aaKnown RBP26.89■■□□□ 1.9
R3HCC1-210ENST00000625275 KLHL34Q8N239 644 aa26.89■■□□□ 1.9
R3HCC1-210ENST00000625275 AK7Q96M32 723 aa26.89■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms