RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 MEGF6O75095 1541 aa33.28■■■□□ 2.92
CPSF1-214ENST00000622776 NBPF6Q5VWK0 638 aa33.28■■■□□ 2.92
CPSF1-214ENST00000622776 NBPF4Q96M43 638 aa33.28■■■□□ 2.92
CPSF1-214ENST00000622776 KCNQ4P56696 695 aa33.25■■■□□ 2.91
CPSF1-214ENST00000622776 SLC16A10Q8TF71 515 aa33.25■■■□□ 2.91
CPSF1-214ENST00000622776 NSD2O96028 1365 aa33.24■■■□□ 2.91
CPSF1-214ENST00000622776 TRIM26Q12899 539 aaPredicted RBP33.23■■■□□ 2.91
CPSF1-214ENST00000622776 USHBP1Q8N6Y0 703 aa33.23■■■□□ 2.91
CPSF1-214ENST00000622776 MAP3K5Q99683 1374 aa33.22■■■□□ 2.91
CPSF1-214ENST00000622776 DOT1LQ8TEK3 1739 aa33.22■■■□□ 2.91
CPSF1-214ENST00000622776 SHANK3Q9BYB0 1731 aa33.22■■■□□ 2.91
CPSF1-214ENST00000622776 CDCA8Q53HL2 280 aa33.22■■■□□ 2.91
CPSF1-214ENST00000622776 CGNL1Q0VF96 1302 aa33.22■■■□□ 2.91
CPSF1-214ENST00000622776 PNPLA7Q6ZV29 1317 aa33.22■■■□□ 2.91
CPSF1-214ENST00000622776 RAPGEF4Q8WZA2 1011 aa33.21■■■□□ 2.91
CPSF1-214ENST00000622776 TFCP2L1Q9NZI6 479 aa33.21■■■□□ 2.91
CPSF1-214ENST00000622776 UTRNP46939 3433 aa33.21■■■□□ 2.91
CPSF1-214ENST00000622776 SMG6Q86US8 1419 aaKnown RBP33.2■■■□□ 2.91
CPSF1-214ENST00000622776 QSER1Q2KHR3 1735 aa33.19■■■□□ 2.9
CPSF1-214ENST00000622776 HSP90AB2PQ58FF8 381 aa33.18■■■□□ 2.9
CPSF1-214ENST00000622776 INSRP06213 1382 aa33.18■■■□□ 2.9
CPSF1-214ENST00000622776 TATP17735 454 aaPredicted RBP33.17■■■□□ 2.9
CPSF1-214ENST00000622776 POLD1P28340 1107 aa33.17■■■□□ 2.9
CPSF1-214ENST00000622776 CCNL1Q9UK58 526 aaPredicted RBP33.17■■■□□ 2.9
CPSF1-214ENST00000622776 LY75O60449 1722 aa33.16■■■□□ 2.9
CPSF1-214ENST00000622776 FLT4P35916 1363 aa33.14■■■□□ 2.9
CPSF1-214ENST00000622776 ZNF784Q8NCA9 323 aaPredicted RBP33.14■■■□□ 2.9
CPSF1-214ENST00000622776 KIF24Q5T7B8 1368 aa33.13■■■□□ 2.89
CPSF1-214ENST00000622776 CARD14Q9BXL6 1004 aa33.13■■■□□ 2.89
CPSF1-214ENST00000622776 KIF20BQ96Q89 1820 aa33.12■■■□□ 2.89
CPSF1-214ENST00000622776 TUBGCP6Q96RT7 1819 aa33.12■■■□□ 2.89
CPSF1-214ENST00000622776 KLHL34Q8N239 644 aa33.11■■■□□ 2.89
CPSF1-214ENST00000622776 CHD4Q14839 1912 aa33.1■■■□□ 2.89
CPSF1-214ENST00000622776 PCDH11XQ9BZA7 1347 aa33.09■■■□□ 2.89
CPSF1-214ENST00000622776 PCDH11YQ9BZA8 1340 aa33.09■■■□□ 2.89
CPSF1-214ENST00000622776 COL24A1Q17RW2 1714 aa33.09■■■□□ 2.89
CPSF1-214ENST00000622776 GPR162Q16538 588 aa33.08■■■□□ 2.89
CPSF1-214ENST00000622776 EMILIN1Q9Y6C2 1016 aa33.07■■■□□ 2.88
CPSF1-214ENST00000622776 NSD3Q9BZ95 1437 aa33.07■■■□□ 2.88
CPSF1-214ENST00000622776 COL23A1Q86Y22 540 aaPredicted RBP33.05■■■□□ 2.88
CPSF1-214ENST00000622776 CYP27B1O15528 508 aa33.04■■■□□ 2.88
CPSF1-214ENST00000622776 MSH5O43196 834 aa33.04■■■□□ 2.88
CPSF1-214ENST00000622776 MPRIPQ6WCQ1 1025 aa33.02■■■□□ 2.88
CPSF1-214ENST00000622776 TIMELESSQ9UNS1 1208 aa33.02■■■□□ 2.88
CPSF1-214ENST00000622776 PPM1GO15355 546 aaPredicted RBP33■■■□□ 2.87
CPSF1-214ENST00000622776 PALLDQ8WX93 1383 aa32.99■■■□□ 2.87
CPSF1-214ENST00000622776 NLGN2Q8NFZ4 835 aa32.99■■■□□ 2.87
CPSF1-214ENST00000622776 HMGB2P26583 209 aaKnown RBP32.98■■■□□ 2.87
CPSF1-214ENST00000622776 PELP1Q8IZL8 1130 aaKnown RBP32.98■■■□□ 2.87
CPSF1-214ENST00000622776 NCAPD2Q15021 1401 aa32.95■■■□□ 2.87
CPSF1-214ENST00000622776 MSL1Q68DK7 614 aa32.95■■■□□ 2.87
CPSF1-214ENST00000622776 WASHC2AQ641Q2 1341 aa32.95■■■□□ 2.86
CPSF1-214ENST00000622776 SMARCC1Q92922 1105 aaPredicted RBP32.94■■■□□ 2.86
CPSF1-214ENST00000622776 C5P01031 1676 aa32.94■■■□□ 2.86
CPSF1-214ENST00000622776 FLAD1Q8NFF5 587 aa32.93■■■□□ 2.86
CPSF1-214ENST00000622776 SPG7Q9UQ90 795 aa32.93■■■□□ 2.86
CPSF1-214ENST00000622776 GOLGB1Q14789 3259 aaKnown RBP32.92■■■□□ 2.86
CPSF1-214ENST00000622776 PKD1L3Q7Z443 1732 aa32.92■■■□□ 2.86
CPSF1-214ENST00000622776 NKX1-1Q15270 411 aaPredicted RBP32.92■■■□□ 2.86
CPSF1-214ENST00000622776 EYA1Q99502 592 aa32.92■■■□□ 2.86
CPSF1-214ENST00000622776 TOGARAM1Q9Y4F4 1720 aa32.91■■■□□ 2.86
CPSF1-214ENST00000622776 PIGBQ92521 554 aa32.91■■■□□ 2.86
CPSF1-214ENST00000622776 ITGB4P16144 1822 aa32.91■■■□□ 2.86
CPSF1-214ENST00000622776 TAF1LQ8IZX4 1826 aa32.9■■■□□ 2.86
CPSF1-214ENST00000622776 ANKRD26Q9UPS8 1709 aa32.89■■■□□ 2.86
CPSF1-214ENST00000622776 POLKQ9UBT6 870 aa32.89■■■□□ 2.86
CPSF1-214ENST00000622776 MAP2P11137 1827 aaKnown RBP32.88■■■□□ 2.85
CPSF1-214ENST00000622776 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.88■■■□□ 2.85
CPSF1-214ENST00000622776 CLSPNQ9HAW4 1339 aa32.87■■■□□ 2.85
CPSF1-214ENST00000622776 AK7Q96M32 723 aa32.86■■■□□ 2.85
CPSF1-214ENST00000622776 POLR3GLQ9BT43 218 aa32.86■■■□□ 2.85
CPSF1-214ENST00000622776 YBX3P16989 372 aaKnown RBP eCLIP32.85■■■□□ 2.851e-6■■□□□ 11.4
CPSF1-214ENST00000622776 GRIN3BO60391 1043 aa32.84■■■□□ 2.85
CPSF1-214ENST00000622776 C4BP0C0L5 1744 aa32.83■■■□□ 2.85
CPSF1-214ENST00000622776 AMIGO3Q86WK7 504 aa32.83■■■□□ 2.85
CPSF1-214ENST00000622776 PCGF6Q9BYE7 350 aa32.83■■■□□ 2.85
CPSF1-214ENST00000622776 C1QTNF8P60827 252 aa32.82■■■□□ 2.84
CPSF1-214ENST00000622776 CD2APQ9Y5K6 639 aa32.82■■■□□ 2.84
CPSF1-214ENST00000622776 LOC102724428A0A0B4J2F2 783 aa32.81■■■□□ 2.84
CPSF1-214ENST00000622776 TNNT2P45379 298 aaPredicted RBP32.81■■■□□ 2.84
CPSF1-214ENST00000622776 SIK1P57059 783 aa32.81■■■□□ 2.84
CPSF1-214ENST00000622776 IFNL2Q8IZJ0 200 aa32.81■■■□□ 2.84
CPSF1-214ENST00000622776 TMOD3Q9NYL9 352 aa32.81■■■□□ 2.84
CPSF1-214ENST00000622776 PHKG2P15735 406 aa32.8■■■□□ 2.84
CPSF1-214ENST00000622776 EIF4A2Q14240 407 aaKnown RBP32.8■■■□□ 2.84
CPSF1-214ENST00000622776 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP32.78■■■□□ 2.84
CPSF1-214ENST00000622776 PHF14O94880 888 aa32.78■■■□□ 2.84
CPSF1-214ENST00000622776 SMIM5Q71RC9 77 aa32.78■■■□□ 2.84
CPSF1-214ENST00000622776 ASAP1Q9ULH1 1129 aa32.78■■■□□ 2.84
CPSF1-214ENST00000622776 LINC00116Q8NCU8 138 aa32.77■■■□□ 2.84
CPSF1-214ENST00000622776 UBR3Q6ZT12 1888 aa32.76■■■□□ 2.84
CPSF1-214ENST00000622776 SSFA2P28290 1259 aa32.75■■■□□ 2.83
CPSF1-214ENST00000622776 SENP3-EIF4A1A0A087X0R7 540 aa32.73■■■□□ 2.83
CPSF1-214ENST00000622776 EIF4G2P78344 907 aaKnown RBP eCLIP32.73■■■□□ 2.83
CPSF1-214ENST00000622776 ITPK1Q13572 414 aa32.73■■■□□ 2.83
CPSF1-214ENST00000622776 GIGYF1O75420 1035 aaPredicted RBP32.72■■■□□ 2.83
CPSF1-214ENST00000622776 HSPA5P11021 654 aaKnown RBP32.71■■■□□ 2.83
CPSF1-214ENST00000622776 ATP6V1AP38606 617 aa32.71■■■□□ 2.83
CPSF1-214ENST00000622776 PANK3Q9H999 370 aa32.71■■■□□ 2.83
CPSF1-214ENST00000622776 ATG3Q9NT62 314 aa32.71■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms