RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 CCDC85AQ96PX6 553 aaPredicted RBP11.24□□□□□ -0.61
VPS29-212ENST00000621131 COG6Q9Y2V7 657 aa11.24□□□□□ -0.61
VPS29-212ENST00000621131 SLC35F4A4IF30 521 aa11.23□□□□□ -0.61
VPS29-212ENST00000621131 TRAK2O60296 914 aa11.23□□□□□ -0.61
VPS29-212ENST00000621131 WASHC4Q2M389 1173 aa11.23□□□□□ -0.61
VPS29-212ENST00000621131 TSGA10IPQ3SY00 556 aa11.23□□□□□ -0.61
VPS29-212ENST00000621131 CDCA7Q9BWT1 371 aaPredicted RBP11.23□□□□□ -0.61
VPS29-212ENST00000621131 OSBPL3Q9H4L5 887 aa11.23□□□□□ -0.61
VPS29-212ENST00000621131 RNF144AP50876 292 aaPredicted RBP11.22□□□□□ -0.61
VPS29-212ENST00000621131 TMEM132AQ24JP5 1023 aa11.22□□□□□ -0.61
VPS29-212ENST00000621131 A0A1W2PRU2 124 aa11.21□□□□□ -0.61
VPS29-212ENST00000621131 CCDC155Q8N6L0 562 aa11.2□□□□□ -0.62
VPS29-212ENST00000621131 CHIC2Q9UKJ5 165 aa11.2□□□□□ -0.62
VPS29-212ENST00000621131 INSM1Q01101 510 aaPredicted RBP11.19□□□□□ -0.62
VPS29-212ENST00000621131 CYP2U1Q7Z449 544 aa11.19□□□□□ -0.62
VPS29-212ENST00000621131 SENP3-EIF4A1A0A087X0R7 540 aa11.18□□□□□ -0.62
VPS29-212ENST00000621131 POM121Q96HA1 1249 aa11.18□□□□□ -0.62
VPS29-212ENST00000621131 MEN1O00255 615 aa11.17□□□□□ -0.62
VPS29-212ENST00000621131 GPC1P35052 558 aa11.17□□□□□ -0.62
VPS29-212ENST00000621131 SLFNL1Q499Z3 407 aa11.17□□□□□ -0.62
VPS29-212ENST00000621131 LYSMD3Q7Z3D4 306 aa11.17□□□□□ -0.62
VPS29-212ENST00000621131 LORP23490 312 aaPredicted RBP11.16□□□□□ -0.62
VPS29-212ENST00000621131 FLIIQ13045 1269 aa11.16□□□□□ -0.62
VPS29-212ENST00000621131 CLN3Q13286 438 aa11.16□□□□□ -0.62
VPS29-212ENST00000621131 GPR161Q8N6U8 529 aaKnown RBP11.16□□□□□ -0.62
VPS29-212ENST00000621131 NANOS1Q8WY41 292 aaKnown RBP11.16□□□□□ -0.62
VPS29-212ENST00000621131 ESF1Q9H501 851 aaKnown RBP11.16□□□□□ -0.62
VPS29-212ENST00000621131 PRICKLE2Q7Z3G6 844 aa11.15□□□□□ -0.62
VPS29-212ENST00000621131 RNF135Q8IUD6 432 aa11.15□□□□□ -0.62
VPS29-212ENST00000621131 GNRH1P01148 92 aa11.14□□□□□ -0.63
VPS29-212ENST00000621131 SOX11P35716 441 aa11.14□□□□□ -0.63
VPS29-212ENST00000621131 SEMA3FQ13275 785 aa11.14□□□□□ -0.63
VPS29-212ENST00000621131 GRIP2Q9C0E4 1043 aa11.14□□□□□ -0.63
VPS29-212ENST00000621131 DOLKQ9UPQ8 538 aa11.14□□□□□ -0.63
VPS29-212ENST00000621131 MYCP01106 439 aaPredicted RBP11.13□□□□□ -0.63
VPS29-212ENST00000621131 ITGA6P23229 1130 aa11.13□□□□□ -0.63
VPS29-212ENST00000621131 USP4Q13107 963 aa11.13□□□□□ -0.63
VPS29-212ENST00000621131 NLRP3Q96P20 1036 aa11.13□□□□□ -0.63
VPS29-212ENST00000621131 ARHGEF10LQ9HCE6 1279 aa11.13□□□□□ -0.63
VPS29-212ENST00000621131 IL2RAP01589 272 aa11.11□□□□□ -0.63
VPS29-212ENST00000621131 RHOQP17081 205 aa11.11□□□□□ -0.63
VPS29-212ENST00000621131 ALG2Q9H553 416 aa11.11□□□□□ -0.63
VPS29-212ENST00000621131 RAB6BQ9NRW1 208 aa11.11□□□□□ -0.63
VPS29-212ENST00000621131 HRH3Q9Y5N1 445 aa11.11□□□□□ -0.63
VPS29-212ENST00000621131 XAGE2Q96GT9 111 aa11.1□□□□□ -0.63
VPS29-212ENST00000621131 ESYT1Q9BSJ8 1104 aa11.1□□□□□ -0.63
VPS29-212ENST00000621131 STK17AQ9UEE5 414 aa11.1□□□□□ -0.63
VPS29-212ENST00000621131 RAD21O60216 631 aa11.09□□□□□ -0.63
VPS29-212ENST00000621131 UBTFP17480 764 aaKnown RBP11.09□□□□□ -0.63
VPS29-212ENST00000621131 POU4F2Q12837 409 aa11.09□□□□□ -0.63
VPS29-212ENST00000621131 MAP7D1Q3KQU3 841 aa11.09□□□□□ -0.63
VPS29-212ENST00000621131 SLC27A3Q5K4L6 730 aa11.09□□□□□ -0.63
VPS29-212ENST00000621131 VWA5B2Q8N398 1253 aa11.09□□□□□ -0.63
VPS29-212ENST00000621131 CNKSR1Q969H4 720 aa11.09□□□□□ -0.63
VPS29-212ENST00000621131 SPATA31C2B4DYI2 1134 aa11.08□□□□□ -0.64
VPS29-212ENST00000621131 CENPCQ03188 943 aa11.08□□□□□ -0.64
VPS29-212ENST00000621131 OXLD1Q5BKU9 147 aa11.08□□□□□ -0.64
VPS29-212ENST00000621131 ZSCAN1Q8NBB4 408 aa11.08□□□□□ -0.64
VPS29-212ENST00000621131 PLPP7Q8NBV4 271 aa11.08□□□□□ -0.64
VPS29-212ENST00000621131 KRT76Q01546 638 aa11.07□□□□□ -0.64
VPS29-212ENST00000621131 WWC1Q8IX03 1113 aa11.07□□□□□ -0.64
VPS29-212ENST00000621131 SIRT1Q96EB6 747 aa11.07□□□□□ -0.64
VPS29-212ENST00000621131 CUEDC1Q9NWM3 386 aaPredicted RBP11.07□□□□□ -0.64
VPS29-212ENST00000621131 PIK3CDO00329 1044 aa11.06□□□□□ -0.64
VPS29-212ENST00000621131 SV2AQ7L0J3 742 aa11.06□□□□□ -0.64
VPS29-212ENST00000621131 STAU1O95793 577 aaKnown RBP11.05□□□□□ -0.64
VPS29-212ENST00000621131 WDR44Q5JSH3 913 aa11.05□□□□□ -0.64
VPS29-212ENST00000621131 NBPF10Q6P3W6 841 aaKnown RBP11.05□□□□□ -0.64
VPS29-212ENST00000621131 NBPF15Q8N660 670 aa11.05□□□□□ -0.64
VPS29-212ENST00000621131 POM121CA8CG34 1229 aa11.04□□□□□ -0.64
VPS29-212ENST00000621131 ESCO1Q5FWF5 840 aa11.04□□□□□ -0.64
VPS29-212ENST00000621131 COL25A1Q9BXS0 654 aaPredicted RBP11.04□□□□□ -0.64
VPS29-212ENST00000621131 FHDC1Q9C0D6 1143 aaPredicted RBP11.04□□□□□ -0.64
VPS29-212ENST00000621131 ETNK1Q9HBU6 452 aa11.04□□□□□ -0.64
VPS29-212ENST00000621131 DYRK1BQ9Y463 629 aa11.04□□□□□ -0.64
VPS29-212ENST00000621131 CDC14CA4D256 554 aa11.03□□□□□ -0.64
VPS29-212ENST00000621131 CNTNAP3BQ96NU0 1288 aa11.03□□□□□ -0.64
VPS29-212ENST00000621131 CNTNAP3Q9BZ76 1288 aa11.03□□□□□ -0.64
VPS29-212ENST00000621131 RNFT1Q5M7Z0 435 aa11.02□□□□□ -0.65
VPS29-212ENST00000621131 ADAMTS19Q8TE59 1207 aa11.02□□□□□ -0.65
VPS29-212ENST00000621131 WASLO00401 505 aaPredicted RBP11.01□□□□□ -0.65
VPS29-212ENST00000621131 SCNN1DP51172 638 aa11.01□□□□□ -0.65
VPS29-212ENST00000621131 TAS1R3Q7RTX0 852 aa11.01□□□□□ -0.65
VPS29-212ENST00000621131 NFATC2IPQ8NCF5 419 aa11.01□□□□□ -0.65
VPS29-212ENST00000621131 ZSCAN10Q96SZ4 725 aaPredicted RBP11.01□□□□□ -0.65
VPS29-212ENST00000621131 SKIP12755 728 aa11□□□□□ -0.65
VPS29-212ENST00000621131 DBN1Q16643 649 aa11□□□□□ -0.65
VPS29-212ENST00000621131 TRIM22Q8IYM9 498 aa11□□□□□ -0.65
VPS29-212ENST00000621131 CLUAP1Q96AJ1 413 aa11□□□□□ -0.65
VPS29-212ENST00000621131 FNBP4Q8N3X1 1017 aaPredicted RBP10.99□□□□□ -0.65
VPS29-212ENST00000621131 GMCL1Q96IK5 515 aa10.99□□□□□ -0.65
VPS29-212ENST00000621131 TIMMDC1Q9NPL8 285 aa10.99□□□□□ -0.65
VPS29-212ENST00000621131 PCDHGA11Q9Y5H2 935 aa10.99□□□□□ -0.65
VPS29-212ENST00000621131 LZTS3O60299 673 aaPredicted RBP10.98□□□□□ -0.65
VPS29-212ENST00000621131 INHAP05111 366 aa10.98□□□□□ -0.65
VPS29-212ENST00000621131 HDGFL1Q5TGJ6 251 aa10.98□□□□□ -0.65
VPS29-212ENST00000621131 ZNF837Q96EG3 531 aaPredicted RBP10.98□□□□□ -0.65
VPS29-212ENST00000621131 GAS2L1Q99501 681 aaPredicted RBP10.98□□□□□ -0.65
VPS29-212ENST00000621131 GDF10P55107 478 aa10.97□□□□□ -0.65
VPS29-212ENST00000621131 RIPOR1Q6ZS17 1223 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms