RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 LY75O60449 1722 aa26.43■■□□□ 1.82
CDX1-202ENST00000616154 ZNF827Q17R98 1081 aa26.42■■□□□ 1.82
CDX1-202ENST00000616154 SLC27A3Q5K4L6 730 aa26.42■■□□□ 1.82
CDX1-202ENST00000616154 ZCRB1Q8TBF4 217 aaKnown RBP26.42■■□□□ 1.82
CDX1-202ENST00000616154 SGIP1Q9BQI5 828 aa26.42■■□□□ 1.82
CDX1-202ENST00000616154 SMG6Q86US8 1419 aaKnown RBP26.42■■□□□ 1.82
CDX1-202ENST00000616154 NBPF6Q5VWK0 638 aa26.4■■□□□ 1.82
CDX1-202ENST00000616154 NBPF4Q96M43 638 aa26.4■■□□□ 1.82
CDX1-202ENST00000616154 NSD2O96028 1365 aa26.4■■□□□ 1.82
CDX1-202ENST00000616154 CGNL1Q0VF96 1302 aa26.4■■□□□ 1.82
CDX1-202ENST00000616154 KIF24Q5T7B8 1368 aa26.39■■□□□ 1.82
CDX1-202ENST00000616154 TUBGCP6Q96RT7 1819 aa26.39■■□□□ 1.81
CDX1-202ENST00000616154 PRIM1P49642 420 aaKnown RBP26.39■■□□□ 1.81
CDX1-202ENST00000616154 CCER1Q8TC90 406 aaPredicted RBP26.39■■□□□ 1.81
CDX1-202ENST00000616154 AKT1S1Q96B36 256 aa26.39■■□□□ 1.81
CDX1-202ENST00000616154 SYTL4Q96C24 671 aaPredicted RBP26.39■■□□□ 1.81
CDX1-202ENST00000616154 INSRP06213 1382 aa26.38■■□□□ 1.81
CDX1-202ENST00000616154 FLT4P35916 1363 aa26.38■■□□□ 1.81
CDX1-202ENST00000616154 FHDC1Q9C0D6 1143 aaPredicted RBP26.37■■□□□ 1.81
CDX1-202ENST00000616154 COL24A1Q17RW2 1714 aa26.37■■□□□ 1.81
CDX1-202ENST00000616154 USHBP1Q8N6Y0 703 aa26.36■■□□□ 1.81
CDX1-202ENST00000616154 SYT17Q9BSW7 474 aa26.36■■□□□ 1.81
CDX1-202ENST00000616154 HSP90AB2PQ58FF8 381 aa26.35■■□□□ 1.81
CDX1-202ENST00000616154 RAPGEF4Q8WZA2 1011 aa26.35■■□□□ 1.81
CDX1-202ENST00000616154 CARD14Q9BXL6 1004 aa26.35■■□□□ 1.81
CDX1-202ENST00000616154 NSD3Q9BZ95 1437 aa26.35■■□□□ 1.81
CDX1-202ENST00000616154 ARXQ96QS3 562 aa26.34■■□□□ 1.81
CDX1-202ENST00000616154 ANKRD26Q9UPS8 1709 aa26.34■■□□□ 1.81
CDX1-202ENST00000616154 MAP3K5Q99683 1374 aa26.33■■□□□ 1.81
CDX1-202ENST00000616154 TATP17735 454 aaPredicted RBP26.32■■□□□ 1.8
CDX1-202ENST00000616154 SLC16A10Q8TF71 515 aa26.32■■□□□ 1.8
CDX1-202ENST00000616154 PNPLA7Q6ZV29 1317 aa26.31■■□□□ 1.8
CDX1-202ENST00000616154 PKD1L3Q7Z443 1732 aa26.29■■□□□ 1.8
CDX1-202ENST00000616154 UTRNP46939 3433 aa26.29■■□□□ 1.8
CDX1-202ENST00000616154 KCNQ4P56696 695 aa26.29■■□□□ 1.8
CDX1-202ENST00000616154 PCDH11XQ9BZA7 1347 aa26.29■■□□□ 1.8
CDX1-202ENST00000616154 PCDH11YQ9BZA8 1340 aa26.29■■□□□ 1.8
CDX1-202ENST00000616154 TFCP2L1Q9NZI6 479 aa26.28■■□□□ 1.8
CDX1-202ENST00000616154 MAP2P11137 1827 aaKnown RBP26.27■■□□□ 1.8
CDX1-202ENST00000616154 CHD4Q14839 1912 aa26.27■■□□□ 1.8
CDX1-202ENST00000616154 CCNL1Q9UK58 526 aaPredicted RBP26.27■■□□□ 1.8
CDX1-202ENST00000616154 EMILIN1Q9Y6C2 1016 aa26.27■■□□□ 1.8
CDX1-202ENST00000616154 NCAPD2Q15021 1401 aa26.27■■□□□ 1.8
CDX1-202ENST00000616154 TOGARAM1Q9Y4F4 1720 aa26.25■■□□□ 1.79
CDX1-202ENST00000616154 C5P01031 1676 aa26.25■■□□□ 1.79
CDX1-202ENST00000616154 ITGB4P16144 1822 aa26.25■■□□□ 1.79
CDX1-202ENST00000616154 TAF1LQ8IZX4 1826 aa26.23■■□□□ 1.79
CDX1-202ENST00000616154 POLD1P28340 1107 aa26.23■■□□□ 1.79
CDX1-202ENST00000616154 CYP27B1O15528 508 aa26.21■■□□□ 1.79
CDX1-202ENST00000616154 WASHC2AQ641Q2 1341 aa26.2■■□□□ 1.79
CDX1-202ENST00000616154 PPM1GO15355 546 aaPredicted RBP26.18■■□□□ 1.78
CDX1-202ENST00000616154 PALLDQ8WX93 1383 aa26.18■■□□□ 1.78
CDX1-202ENST00000616154 EIF4G2P78344 907 aaKnown RBP eCLIP26.17■■□□□ 1.78
CDX1-202ENST00000616154 HMGB2P26583 209 aaKnown RBP26.16■■□□□ 1.78
CDX1-202ENST00000616154 MPRIPQ6WCQ1 1025 aa26.16■■□□□ 1.78
CDX1-202ENST00000616154 COL23A1Q86Y22 540 aaPredicted RBP26.15■■□□□ 1.78
CDX1-202ENST00000616154 NKX1-1Q15270 411 aaPredicted RBP26.14■■□□□ 1.78
CDX1-202ENST00000616154 POLKQ9UBT6 870 aa26.14■■□□□ 1.78
CDX1-202ENST00000616154 KLHL34Q8N239 644 aa26.14■■□□□ 1.77
CDX1-202ENST00000616154 EYA1Q99502 592 aa26.14■■□□□ 1.77
CDX1-202ENST00000616154 SPG7Q9UQ90 795 aa26.14■■□□□ 1.77
CDX1-202ENST00000616154 C4BP0C0L5 1744 aa26.13■■□□□ 1.77
CDX1-202ENST00000616154 HSPA5P11021 654 aaKnown RBP26.13■■□□□ 1.77
CDX1-202ENST00000616154 SMARCC1Q92922 1105 aaPredicted RBP26.13■■□□□ 1.77
CDX1-202ENST00000616154 POLR3GLQ9BT43 218 aa26.13■■□□□ 1.77
CDX1-202ENST00000616154 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.13■■□□□ 1.77
CDX1-202ENST00000616154 MSH5O43196 834 aa26.12■■□□□ 1.77
CDX1-202ENST00000616154 ZNF784Q8NCA9 323 aaPredicted RBP26.12■■□□□ 1.77
CDX1-202ENST00000616154 GPR162Q16538 588 aa26.11■■□□□ 1.77
CDX1-202ENST00000616154 FLAD1Q8NFF5 587 aa26.1■■□□□ 1.77
CDX1-202ENST00000616154 PIGBQ92521 554 aa26.1■■□□□ 1.77
CDX1-202ENST00000616154 UBR3Q6ZT12 1888 aa26.1■■□□□ 1.77
CDX1-202ENST00000616154 PLEKHG2Q9H7P9 1386 aa26.09■■□□□ 1.77
CDX1-202ENST00000616154 NLGN2Q8NFZ4 835 aa26.08■■□□□ 1.77
CDX1-202ENST00000616154 GOLGB1Q14789 3259 aaKnown RBP26.07■■□□□ 1.76
CDX1-202ENST00000616154 EIF4A2Q14240 407 aaKnown RBP26.07■■□□□ 1.76
CDX1-202ENST00000616154 TNNT2P45379 298 aaPredicted RBP26.05■■□□□ 1.76
CDX1-202ENST00000616154 MSL1Q68DK7 614 aa26.05■■□□□ 1.76
CDX1-202ENST00000616154 PHKG2P15735 406 aa26.04■■□□□ 1.76
CDX1-202ENST00000616154 IFNL2Q8IZJ0 200 aa26.04■■□□□ 1.76
CDX1-202ENST00000616154 AK7Q96M32 723 aa26.04■■□□□ 1.76
CDX1-202ENST00000616154 PANK3Q9H999 370 aa26.04■■□□□ 1.76
CDX1-202ENST00000616154 TMOD3Q9NYL9 352 aa26.03■■□□□ 1.76
CDX1-202ENST00000616154 PELP1Q8IZL8 1130 aaKnown RBP26.02■■□□□ 1.76
CDX1-202ENST00000616154 IGSF1Q8N6C5 1336 aa26.02■■□□□ 1.76
CDX1-202ENST00000616154 LOC102724428A0A0B4J2F2 783 aa26.01■■□□□ 1.75
CDX1-202ENST00000616154 SIK1P57059 783 aa26.01■■□□□ 1.75
CDX1-202ENST00000616154 AMIGO3Q86WK7 504 aa25.99■■□□□ 1.75
CDX1-202ENST00000616154 LINC00116Q8NCU8 138 aa25.98■■□□□ 1.75
CDX1-202ENST00000616154 ASAP1Q9ULH1 1129 aa25.98■■□□□ 1.75
CDX1-202ENST00000616154 CD2APQ9Y5K6 639 aa25.97■■□□□ 1.75
CDX1-202ENST00000616154 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.96■■□□□ 1.75
CDX1-202ENST00000616154 SSFA2P28290 1259 aa25.96■■□□□ 1.75
CDX1-202ENST00000616154 ZNF831Q5JPB2 1677 aa25.96■■□□□ 1.75
CDX1-202ENST00000616154 GRIN3BO60391 1043 aa25.95■■□□□ 1.75
CDX1-202ENST00000616154 PHF14O94880 888 aa25.95■■□□□ 1.75
CDX1-202ENST00000616154 YBX3P16989 372 aaKnown RBP eCLIP25.95■■□□□ 1.75
CDX1-202ENST00000616154 ITPK1Q13572 414 aa25.94■■□□□ 1.74
CDX1-202ENST00000616154 ATG3Q9NT62 314 aa25.94■■□□□ 1.74
CDX1-202ENST00000616154 ATP6V1AP38606 617 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms