RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 CLIP2Q9UDT6 1046 aa10.24□□□□□ -0.77
TTC28-208ENST00000612946 CYP46A1Q9Y6A2 500 aa10.23□□□□□ -0.77
TTC28-208ENST00000612946 NKTRP30414 1462 aaKnown RBP10.23□□□□□ -0.77
TTC28-208ENST00000612946 CCDC121Q6ZUS5 278 aa10.23□□□□□ -0.77
TTC28-208ENST00000612946 PIP4K2BP78356 416 aa10.23□□□□□ -0.77
TTC28-208ENST00000612946 TCHPQ9BT92 498 aa10.23□□□□□ -0.77
TTC28-208ENST00000612946 BCCIPQ9P287 314 aaKnown RBP eCLIP10.23□□□□□ -0.77
TTC28-208ENST00000612946 TACO1Q9BSH4 297 aaKnown RBP10.23□□□□□ -0.77
TTC28-208ENST00000612946 RBBP5Q15291 538 aaKnown RBP10.22□□□□□ -0.77
TTC28-208ENST00000612946 NBPF11Q86T75 865 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 ARFGAP2Q8N6H7 521 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 LRRFIP2Q9Y608 721 aaKnown RBP10.22□□□□□ -0.77
TTC28-208ENST00000612946 LRCH2Q5VUJ6 765 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 SLC4A10Q6U841 1118 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 VPS36Q86VN1 386 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 MAP2K2P36507 400 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 SYCP1Q15431 976 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 PANK3Q9H999 370 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 EVC2Q86UK5 1308 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 EFCAB5A4FU69 1503 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 GNAI3P08754 354 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 TCEAL9Q9UHQ7 104 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 PPFIA3O75145 1194 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 EIF5P55010 431 aaKnown RBP10.22□□□□□ -0.77
TTC28-208ENST00000612946 IFT74Q96LB3 600 aa10.22□□□□□ -0.77
TTC28-208ENST00000612946 MAPK8IP2Q13387 824 aaPredicted RBP10.21□□□□□ -0.77
TTC28-208ENST00000612946 SPA17Q15506 151 aa10.21□□□□□ -0.77
TTC28-208ENST00000612946 PYM1Q9BRP8 204 aaKnown RBP10.21□□□□□ -0.77
TTC28-208ENST00000612946 G3BP1Q13283 466 aaKnown RBP eCLIP10.21□□□□□ -0.77
TTC28-208ENST00000612946 PAFAH1B1P43034 410 aa10.21□□□□□ -0.77
TTC28-208ENST00000612946 MYOM3Q5VTT5 1437 aa10.21□□□□□ -0.77
TTC28-208ENST00000612946 GOLIM4O00461 696 aa10.21□□□□□ -0.77
TTC28-208ENST00000612946 KLHL34Q8N239 644 aa10.21□□□□□ -0.77
TTC28-208ENST00000612946 C16orf45Q96MC5 204 aaPredicted RBP10.21□□□□□ -0.77
TTC28-208ENST00000612946 ME1P48163 572 aa10.21□□□□□ -0.78
TTC28-208ENST00000612946 LMNTD2Q8IXW0 634 aa10.21□□□□□ -0.78
TTC28-208ENST00000612946 IFFO1Q0D2I5 559 aa10.21□□□□□ -0.78
TTC28-208ENST00000612946 NFXL1Q6ZNB6 911 aa10.21□□□□□ -0.78
TTC28-208ENST00000612946 WASF1Q92558 559 aa10.21□□□□□ -0.78
TTC28-208ENST00000612946 ATP6V1AP38606 617 aa10.21□□□□□ -0.78
TTC28-208ENST00000612946 DDX58O95786 925 aaKnown RBP10.21□□□□□ -0.78
TTC28-208ENST00000612946 CEP131Q9UPN4 1083 aa10.21□□□□□ -0.78
TTC28-208ENST00000612946 LUC7L3O95232 432 aaKnown RBP10.2□□□□□ -0.78
TTC28-208ENST00000612946 FGFR1OPO95684 399 aaKnown RBP10.2□□□□□ -0.78
TTC28-208ENST00000612946 TAX1BP1Q86VP1 789 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 WIZO95785 1651 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 HSF2BPO75031 334 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 SLU7O95391 586 aaKnown RBP10.2□□□□□ -0.78
TTC28-208ENST00000612946 PHAXQ9H814 394 aaKnown RBP10.2□□□□□ -0.78
TTC28-208ENST00000612946 CCAR1Q8IX12 1150 aaKnown RBP10.2□□□□□ -0.78
TTC28-208ENST00000612946 GOLGA1Q92805 767 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 LNPKQ9C0E8 428 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 USP25Q9UHP3 1055 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 WDR97A6NE52 1622 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 CCDC30Q5VVM6 783 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 LRSAM1Q6UWE0 723 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 WDR63Q8IWG1 891 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 USO1O60763 962 aaKnown RBP10.2□□□□□ -0.78
TTC28-208ENST00000612946 HDXQ7Z353 690 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 NOL7Q9UMY1 257 aaKnown RBP10.2□□□□□ -0.78
TTC28-208ENST00000612946 CETN2P41208 172 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 NOLC1Q14978 699 aaKnown RBP eCLIP10.2□□□□□ -0.78
TTC28-208ENST00000612946 LUC7L2Q9Y383 392 aaKnown RBP10.2□□□□□ -0.78
TTC28-208ENST00000612946 AP1ARQ63HQ0 302 aa10.2□□□□□ -0.78
TTC28-208ENST00000612946 UBE2HP62256 183 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 OTUD6BQ8N6M0 293 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 EFCC1Q9HA90 598 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 FGD6Q6ZV73 1430 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 CAPN2P17655 700 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 HOOK3Q86VS8 718 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 TOP1P11387 765 aaKnown RBP10.19□□□□□ -0.78
TTC28-208ENST00000612946 TSNAXIP1Q2TAA8 658 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 PPP1R12BO60237 982 aaPredicted RBP10.19□□□□□ -0.78
TTC28-208ENST00000612946 PDZRN3Q9UPQ7 1066 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 BANK1Q8NDB2 785 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 TOMM22Q9NS69 142 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 ST20-MTHFSA0A0A6YYL1 179 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 FBF1Q8TES7 1133 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 ADCY5O95622 1261 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 DESP17661 470 aa10.19□□□□□ -0.78
TTC28-208ENST00000612946 LACTBP83111 547 aaPredicted RBP10.19□□□□□ -0.78
TTC28-208ENST00000612946 C9orf78Q9NZ63 289 aaPredicted RBP10.19□□□□□ -0.78
TTC28-208ENST00000612946 CFAP100Q494V2 611 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 TACC1O75410 805 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 EHBP1L1Q8N3D4 1523 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 TRIM22Q8IYM9 498 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 KIF1CO43896 1103 aaKnown RBP10.18□□□□□ -0.78
TTC28-208ENST00000612946 TNPO1Q92973 898 aaKnown RBP10.18□□□□□ -0.78
TTC28-208ENST00000612946 NOL3O60936 208 aaKnown RBP10.18□□□□□ -0.78
TTC28-208ENST00000612946 KLHL10Q6JEL2 608 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 MYRIPQ8NFW9 859 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 LARP1BQ659C4 914 aaKnown RBP10.18□□□□□ -0.78
TTC28-208ENST00000612946 DMTNQ08495 405 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 NUP133Q8WUM0 1156 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 VCXQ9H320 206 aa10.18□□□□□ -0.78
TTC28-208ENST00000612946 MVPQ14764 893 aaKnown RBP10.17□□□□□ -0.78
TTC28-208ENST00000612946 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.17□□□□□ -0.78
TTC28-208ENST00000612946 CCDC43Q96MW1 224 aaKnown RBP10.17□□□□□ -0.78
TTC28-208ENST00000612946 KIF4BQ2VIQ3 1234 aa10.17□□□□□ -0.78
TTC28-208ENST00000612946 ERO1AQ96HE7 468 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms